Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01766 ATGGACACAACAAGCTCTTTAGACGACAGCGCCGCCAGTGACTCCACCTCCGTCTCTCCCGTCACCCCATTACTCTTCCACTCCTCCTCCTCCTCCTGCCCCCCCGGAGTACCCTACGACGCCGAATCCCGGAAGCTTCCATCTTCACGTTTCAAAGGTGTCGTCCCTCAGCCCAACGGCCGATGGGGGGCTCAGATTTACGAGAAGCACCAAAGGGTCTGGTTGGGCACATTCAACCACGAACACCAGGCCGCCAAAGCCTACGACATCGCCGCCCTTCGCTTCCGCGGCCGCGACGCTGTCACCAATTTCAAGCCCGGCGCCTTCTCTTCCGTCGACGCCGCCTTCGAGGCTGACTTTCTCAACTCCCACTCCAAGCTCGAGATCGTCGACATGCTCCGCAAACACACCTACAATGACGAGATCCAGCAAAGCAAGCGATACGGTGGAGGAACGACGACGACGACGACAGCGGCGGCGGCGCACTCTCTCCAGAACGCGGCGTCGGAGTCGGACCGGGAGGTGCTGTTTGAGAAAACCGTGACGCCGAGTGACGTGGGGAAGTTGAACCGGCTGGTGATTCCGAAGCAGCACGCGGAGAAGAATTTTCCATTGGGGGAAGGGATGGGTTCGACCAAAGGAATACTCCTGAATTTCGAGGATATGGGAGGGAAGCTGTGGCGGTTCCGGTACTCGTATTGGAACAGCAGCCAGAGCTATGTGTTGACCAAGGGATGGAGCCGGTTCGTAAAGGAGAAAACCCTCAGAGCCGGGGACGTGGTCCGGTTCCTACGCTCGACCGGCCCGGATAAGAAGCTTTACATCGATGGCAAACCAGGCGGAGTGAAGGCGGTTCAAGTGGTAAAGCTGTTTGGAGTGAATATTTTGGAAGTGCCGGTGGGGTGGTGCGGGAAGAGAGACAGAGAAGGCCTGTCGGAATTAGAAAGGACGAAGAAGCAAAGAATAGTCAAAGCATTGTAA 981 57.29 MDTTSSLDDSAASDSTSVSPVTPLLFHSSSSSCPPGVPYDAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNHEHQAAKAYDIAALRFRGRDAVTNFKPGAFSSVDAAFEADFLNSHSKLEIVDMLRKHTYNDEIQQSKRYGGGTTTTTTAAAAHSLQNAASESDREVLFEKTVTPSDVGKLNRLVIPKQHAEKNFPLGEGMGSTKGILLNFEDMGGKLWRFRYSYWNSSQSYVLTKGWSRFVKEKTLRAGDVVRFLRSTGPDKKLYIDGKPGGVKAVQVVKLFGVNILEVPVGWCGKRDREGLSELERTKKQRIVKAL 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13371389 13372369 + Cp4.1LG01g17620.1 Cpe01g01766 463079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01766 326 CDD AP2 49 104 IPR001471 GO:0003700|GO:0006355
Cpe01g01766 326 PANTHER AP2/ERF AND B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR TEM1 38 302 - -
Cpe01g01766 326 MobiDBLite consensus disorder prediction 1 20 - -
Cpe01g01766 326 Pfam AP2 domain 50 97 IPR001471 GO:0003700|GO:0006355
Cpe01g01766 326 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 38 302 IPR044800 GO:0003700
Cpe01g01766 326 Gene3D - 165 282 IPR015300 -
Cpe01g01766 326 Gene3D AP2/ERF domain 49 106 IPR036955 GO:0003700|GO:0006355
Cpe01g01766 326 SUPERFAMILY DNA-binding pseudobarrel domain 173 270 IPR015300 -
Cpe01g01766 326 SMART B3_2 177 279 IPR003340 GO:0003677
Cpe01g01766 326 CDD B3_DNA 176 263 IPR003340 GO:0003677
Cpe01g01766 326 SUPERFAMILY DNA-binding domain 49 105 IPR016177 GO:0003677
Cpe01g01766 326 SMART rav1_2 50 111 IPR001471 GO:0003700|GO:0006355
Cpe01g01766 326 ProSiteProfiles B3 DNA-binding domain profile. 177 279 IPR003340 GO:0003677
Cpe01g01766 326 ProSiteProfiles AP2/ERF domain profile. 50 105 IPR001471 GO:0003700|GO:0006355
Cpe01g01766 326 Pfam B3 DNA binding domain 177 271 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g01766 Cpe09g00275 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01766 Cpe-Chr1:13371389 Cpe04g01246 Cpe-Chr4:10401412 1.98E-56 dispersed
Cpe17g00978 Cpe-Chr17:7463183 Cpe01g01766 Cpe-Chr1:13371389 4.86E-11 dispersed
Cpe13g00343 Cpe-Chr13:3208495 Cpe01g01766 Cpe-Chr1:13371389 3.73E-169 transposed
Cpe01g01350 Cpe-Chr1:8119732 Cpe01g01766 Cpe-Chr1:13371389 4.67E-122 wgd
Cpe01g01766 Cpe-Chr1:13371389 Cpe09g00275 Cpe-Chr9:1629908 3.76E-127 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48885 PF02362 B3 1.40E-26 CL0405 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01766 K09287 - csv:101206328 444.121