Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01767 ATGCGGAGTGGGAACTTGACTTGCATATCGTCGAGTGAGAGCGCGTGTTTGGAGGGTGATGAAGAAGGAGGAGGAGGAGGAGGAGGAGGAGAAGACTCCATTTTCCTATCCCTTTGTCCGCCAGGCCAACGCCACACAGTTTCTTCCAAACACCGACAACTCCAAAACAAACAAAATCCTGTTACCCCTAATTCCTCTCTCCAAAACCCTAATATTCTTCATCATCAACATGCTGCTGTCACCGTCGCTATGCATATTGGTCCCCCTGCCACCGCCGCCGCCACCGAATCCAACGACGTCTCGGCTGCCCGCCCGGTTGATGGGCAGTACTGGATTCCTACGCCTGCCCAAATCCTCGTTGGTCCCACCCAGTTCTCCTGCTCTGTCTGCAGTAAAACCTTCAACAGATACAACAACATGCAGATGCACATGTGGGGACATGGATCACAGTACAGAAAAGGGCCAGAATCATTAAGAGGATCAAAGCCAGCTTCATCAATGCTACGACTTCCATGCTATTGCTGTGCAGAAGGGTGCAAAAACAACATAGAGCATCCAAGGTCAAGGCCATTGAAAGACTTCAGGACTCTTCAGACCCATTACAAGAGAAAGCATGGAGCAAAGCCTTTCAGTTGTAGGAAATGTGGGAAGCCCTTTGCAGTCCGAGGGGATTGGAGGACACATGAGAAGAACTGTGGAAAGCTTTGGTTTTGCATTTGTGGGTCTGATTTTAAGCACAAAAGATCCCTTAAAGACCATGTTCGAGCCTTTGGAGATGGGCATGCACCTCATACGGTCCAACTTTGTGAGGTTGAAGATGATGATTGGGATGATAATGATGATCATGAACATGTAAATGGATCTCAACCCTGGTCAATTTATCATTAA 888 48.2 MRSGNLTCISSSESACLEGDEEGGGGGGGGEDSIFLSLCPPGQRHTVSSKHRQLQNKQNPVTPNSSLQNPNILHHQHAAVTVAMHIGPPATAAATESNDVSAARPVDGQYWIPTPAQILVGPTQFSCSVCSKTFNRYNNMQMHMWGHGSQYRKGPESLRGSKPASSMLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDWDDNDDHEHVNGSQPWSIYH 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13481581 13483282 + Cp4.1LG01g17580.1 Cpe01g01767 463080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01767 295 SUPERFAMILY beta-beta-alpha zinc fingers 121 147 IPR036236 -
Cpe01g01767 295 Pfam Zinc finger, C2H2 type 125 144 IPR013087 -
Cpe01g01767 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 125 152 IPR013087 -
Cpe01g01767 295 PANTHER ZINC FINGER PROTEIN WIP6 9 284 - -
Cpe01g01767 295 MobiDBLite consensus disorder prediction 15 35 - -
Cpe01g01767 295 ProSitePatterns Zinc finger C2H2 type domain signature. 127 147 IPR013087 -
Cpe01g01767 295 SMART c2h2final6 125 147 IPR013087 -
Cpe01g01767 295 SMART c2h2final6 173 205 IPR013087 -
Cpe01g01767 295 SMART c2h2final6 210 230 IPR013087 -
Cpe01g01767 295 Gene3D Classic Zinc Finger 169 256 - -
Cpe01g01767 295 Gene3D Classic Zinc Finger 124 147 - -
Cpe01g01767 295 SUPERFAMILY beta-beta-alpha zinc fingers 193 230 IPR036236 -
Cpe01g01767 295 PANTHER ZINC FINGER PROTEIN WIP2 9 284 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01767 Cpe-Chr1:13481581 Cpe05g00504 Cpe-Chr5:2977391 1.88E-98 dispersed
Cpe20g00726 Cpe-Chr20:6157225 Cpe01g01767 Cpe-Chr1:13481581 8.07E-26 dispersed
Cpe01g01767 Cpe-Chr1:13481581 Cpe01g01768 Cpe-Chr1:13483454 1.44E-96 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48886 PF00096 zf-C2H2 0.012 CL0361 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01767 - - mcha:111022346 470.314