Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01768 ATGCTACGACTTCCATGCTATTGCTGTGCAGAAGGGTGCAAAAACAACATAGAGCATCCAAGGTCAAGGCCATTGAAAGACTTCAGGACTCTTCAGACCCATTACAAGAGAAAGCATGGAGCAAAGCCTTTCAGTTGTAGGAAATGTGGGAAGCCCTTTGCAGTCCGAGGGGATTGGAGGACACATGAGAAGAACTGTGGAAAGCTTTGGTTTTGCATTTGTGGGTCTGATTTTAAGCACAAAAGATCCCTTAAAGACCATGTTCGAGCCTTTGGAGATGGGCATGCACCTCATACGGTCCAACTTTGTGAGGTTGAAGATGATGATTGGGATGATAATGATGATCATGAACATGTAAATGGATCTCAACCCTGGTCAATTTATCATTAA 390 43.59 MLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDWDDNDDHEHVNGSQPWSIYH 129
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13483454 13483843 + Cp4.1LG01g17600.1 Cpe01g01768 463081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01768 129 PANTHER ZINC FINGER PROTEIN WIP6 1 118 - -
Cpe01g01768 129 PANTHER ZINC FINGER PROTEIN WIP2 1 118 IPR043584 GO:0003700|GO:0010468
Cpe01g01768 129 SUPERFAMILY beta-beta-alpha zinc fingers 30 64 IPR036236 -
Cpe01g01768 129 Gene3D Classic Zinc Finger 3 90 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01768 Cpe-Chr1:13483454 Cpe05g00504 Cpe-Chr5:2977391 5.08E-59 dispersed
Cpe01g01767 Cpe-Chr1:13481581 Cpe01g01768 Cpe-Chr1:13483454 1.44E-96 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48887 None None None None Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01768 - - csv:101216722 259.225