Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01774 ATGACGAGGAAGAAAGTGAAGCTGGCTTACATTGTGAACGACTCCGCAAGAAAGGCGACATTCAAGAAGAGGAAGAGAGGGCTTATGAAGAAGGTGAGTGAATTGAGCACCCTTTGCGGGATTGAGGCATGCGCCATCGTGTTTAGCCCCTACGATGCTCAGCCTGAGCTGTGGCCTTCCCCCATCGGCGTCCAGCGCGTTCTCTCTCAATTCAAGAAGATGCCCGAGATGGAGCAAAGCAAGAAAATGGTGAACCAGGAGACGTTTCTGCGGCAGAGGATCGCCAAGGCCAATGACCAACTGAAGAAGATGAGAAAGGACAACCGGGAGAAAGAGATGACGCGGCTTATGTTTCAAAGCCTCACCGCTGCCAAAGGCCTTCATGCACTCAACATGCTTGACTTGAACGACCTCACTTGGCTCATTGATCAAAATCTCAAAGACATTACTAAACGCATTGACTCTCTCAAGAAGCCTCCGCCCCACTCTCAGCCACACCCTCACCCTCACCCTCACCCTCAGCCGCCTCCCCCGCCCCAGACCGCCGCCTGGCTTATGGAGCTTGTCAGCCCTCAGGACCAAATGGGGTTCGTCGGGGATGACATGCTCTTGCCCTTCGGAGATCAAACTTATAGCCATAATAATGCAATGTGGTCAAATGCCTTTTTCCCTTAG 675 52.44 MTRKKVKLAYIVNDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSPYDAQPELWPSPIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANDQLKKMRKDNREKEMTRLMFQSLTAAKGLHALNMLDLNDLTWLIDQNLKDITKRIDSLKKPPPHSQPHPHPHPHPQPPPPPQTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYSHNNAMWSNAFFP 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13577459 13578284 - Cp4.1LG01g17530.1 Cpe01g01774 463087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01774 224 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cpe01g01774 224 MobiDBLite consensus disorder prediction 154 182 - -
Cpe01g01774 224 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Cpe01g01774 224 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 182 - -
Cpe01g01774 224 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 182 - -
Cpe01g01774 224 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Cpe01g01774 224 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Cpe01g01774 224 MobiDBLite consensus disorder prediction 162 182 - -
Cpe01g01774 224 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Cpe01g01774 224 Coils Coil 87 114 - -
Cpe01g01774 224 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cpe01g01774 224 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cpe01g01774 224 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cpe01g01774 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01774 Cpe-Chr1:13577459 Cpe04g00209 Cpe-Chr4:2178725 8.37E-104 dispersed
Cpe01g01774 Cpe-Chr1:13577459 Cpe05g01055 Cpe-Chr5:6984166 6.16E-14 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48888 PF00319 SRF-TF 2.00E-18 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01774 - - csv:101203059 387.882