Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01797 ATGCAGAGCTTTCATAACCCAGATCACCTCTATCCCCATTCTTCTTCTTCTTCTTCCATCCTTCTCCGGGGAGGAGACGACAGTGGTAACCATACGCGGTTTCTTCCGGATATTGAGGAGCTTCAACAATCCGCTGATTTTCGTCACCATAATTCTGTTGATTTAAGCCCAAGCTCAGTTTTCAGTTTAAAATTGATCCACGACGCAGCTTTTCCAATCCACCACCTACCCTACGCGAACACGGATGTGGGTTCATTAGAAACAGGGTATTTAGACACAGGACAGCAATTGATGCGGTTGAAGAGGCTAGCTCCGCCGCAGACGGTGGCGGCTGCGTCATCGTTGGGAAACGGAAGCTTTGAGAACTGGGGTGAGTCAGCTATGGCTGATAATAGCCAGCAGACTGACACTTCTACAGACATCGACAATGATGAAAGAAACCAGTTTCCGGGAGCTGCTCATGGAGTTCTCGTGGCCGTGGATTCCATGGATCAATCTAAACCGAAATCTGCTGACCAGAAGACTCTTCGTAGGCTTGCTCAGAATCGAGAAGCAGCGAAGAAGAGTCGGCTGAGGAAGAAGGCATATGTCCAGCAGCTGGAAAACAGTCGACAGAGGCTTTCTCAGCTAGAACAGGACCTTCATCGAGCACGCCAACAGGGCATTTTTGTGGCTTCTGGGACAGCGAACCATTGTTTATCAATGCCAGGAAATGGTGCCTTGGCATTTGATCTCGACTATGCACGGTGGCTCGAGGAGCATCAACGTCTGATCAATGATTTGAGAGCATCGGCGAATTCTCAGTTGAGCGACGATGAATTGCGATTTCTTGTTGATGGGGTGATGGCACATTATGATGAACTCTTCAGGCTGAAAAGCGTTGGCGCCAAGGCTGACGTATTTCACATTCTTTCGGGCATGTGGAAGACTCCGGCCGAGAGGTGTTTCATGTGGCTAGGAGGATTCCGTTCGTCCGAACTTCTGAAGATAGTTGGGAACCATTTGGAGCCTTTAACGGATCAGCAGTTGATGGGCATATGCAATTTGCAGCAATCTTCCCAACAAGCTGAAGATGCATTGTCACAAGGGATTGAAGCTTTGCAACAATCTCTTGTAGAAACCCTTTCCTCTGCTTCTTTAGGACCTGCCTGTTCCGGTAATGTTGCCGATTACATGGGCCAAATGGCTATTGCAATGAGCAAACTAACAACGCTAGAGAACTTTCTCCATCAGGCTGATCTTCTAAGACAACAAACGCTACAACAAATGCATCGAATACTAACTACTCGTCAAGCTGCACGAGCACTTCTCGTCATCAGTGATTACATTTCACGTCTTCGAGCTCTCAGTTCTCTGTGGTTAGCACGACCAAGAGACTGA 1380 47.97 MQSFHNPDHLYPHSSSSSSILLRGGDDSGNHTRFLPDIEELQQSADFRHHNSVDLSPSSVFSLKLIHDAAFPIHHLPYANTDVGSLETGYLDTGQQLMRLKRLAPPQTVAAASSLGNGSFENWGESAMADNSQQTDTSTDIDNDERNQFPGAAHGVLVAVDSMDQSKPKSADQKTLRRLAQNREAAKKSRLRKKAYVQQLENSRQRLSQLEQDLHRARQQGIFVASGTANHCLSMPGNGALAFDLDYARWLEEHQRLINDLRASANSQLSDDELRFLVDGVMAHYDELFRLKSVGAKADVFHILSGMWKTPAERCFMWLGGFRSSELLKIVGNHLEPLTDQQLMGICNLQQSSQQAEDALSQGIEALQQSLVETLSSASLGPACSGNVADYMGQMAIAMSKLTTLENFLHQADLLRQQTLQQMHRILTTRQAARALLVISDYISRLRALSSLWLARPRD 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14649876 14653021 - Cp4.1LG01g17990.1 Cpe01g01797 463110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01797 459 PANTHER TRANSCRIPTION FACTOR TGA9 98 459 - -
Cpe01g01797 459 PANTHER TRANSCRIPTION FACTOR PERIANTHIA 98 459 - -
Cpe01g01797 459 Gene3D - 174 220 - -
Cpe01g01797 459 Pfam bZIP transcription factor 173 215 IPR004827 GO:0003700|GO:0006355
Cpe01g01797 459 MobiDBLite consensus disorder prediction 1 25 - -
Cpe01g01797 459 Coils Coil 193 220 - -
Cpe01g01797 459 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 177 192 IPR004827 GO:0003700|GO:0006355
Cpe01g01797 459 SUPERFAMILY Leucine zipper domain 174 217 IPR046347 GO:0003700|GO:0006355
Cpe01g01797 459 ProSiteProfiles DOG1 domain profile. 240 456 IPR025422 GO:0006351|GO:0043565
Cpe01g01797 459 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 172 216 IPR004827 GO:0003700|GO:0006355
Cpe01g01797 459 Pfam Seed dormancy control 258 331 IPR025422 GO:0006351|GO:0043565
Cpe01g01797 459 SMART brlzneu 170 238 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01797 Cpe-Chr1:14649876 Cpe03g00448 Cpe-Chr3:2531607 6.54E-168 dispersed
Cpe14g00573 Cpe-Chr14:3635226 Cpe01g01797 Cpe-Chr1:14649876 7.12E-95 dispersed
Cpe01g01797 Cpe-Chr1:14649876 Cpe13g00411 Cpe-Chr13:4453535 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48890 PF14144 DOG1 3.20E-30 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01797 K14431 - csv:101210308 761.14