Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01799 ATGATTTTCTCCCACAAAATGCAACAAATTGCATTTCAAATGGGTTTCACTCTCTCCGATTTCGCTCTCACTTTGGAACAAGAGCGCCGTAAAGTCCTCATGTTCCAGCGCGAGCTCCCTCTCTGTTTGGAGATTGTTACTCGCGCCATTGATTGTTGTAGGCATCACGTGTCGGAGACCACGACGGAGAATCGTCTATCGGAGTGTTCGGAGCAGACTTCCAGTGACGTGGGTCCGGTTCTTGAGGAGTTTATTCCGATTAATAGATATGGGGTTTCTGATTCTGAACAACAACAACAACAACTACAACGACAACAACAACTGCCCTGTGAAACTCAAACGGAGAACACTGACGACTCTGATCGAAATAATTTGAATTTGTGTCCGTCGGATTGGCTCAGATCTGCCCAGCTTTGGAAGGATCCTTCTGCCTTGAATCAGGACCTGCCGGAGAAGACGGCTGTTGTTGAGGTCAAGAGTAATGGCGGAGCTTTCCGGCCATTTCAGAAGGAGAAAACCGGTGGCGGAGGAACGTCATCGACTTCGGCTCCGGCTGCGACGAGCTCCACTGCGGAAATGGGGTCCGGTGGAAGTAATCGACGGGAAGAAAAAGAAGCGCAGAATCAGAGGAAACAAAGACGGTGCTGGTCACCGGAGCTACACCGGCGATTCCTTCATGCTCTTCAACAGCTCGGAGGTTCCCATGTGGCGACGCCGAAGCAAATCAGAGAGTTGATGAAGGTGGATGGCCTTACCAACGACGAAGTGAAAAGTCATTTACAGAAATATCGTCTACACACGAGACGCCCAAGTACAACAATGCACCACGACGACACCTCCCAGACGCCGCAGTTCCTGGTTGTGGGCGGCATATGGGTACCGGCTGCGGAGTACGCCACCACATCCACCGGAGAAGCAGTGAGAGCAGCCACCAGGAACGGAATGTATGCACCGGTGGTTAGGACGACGGCACAGGGATTAGCGAGTACAGTGGCGAAGGCGAAGGCTATAGTATCTGGGGGTGCGGCGGAGTGTAATTCTGCTACTACATCGTCCTCCACACATACGTCATCAGTTTCACCTGCTTGA 1089 51.79 MIFSHKMQQIAFQMGFTLSDFALTLEQERRKVLMFQRELPLCLEIVTRAIDCCRHHVSETTTENRLSECSEQTSSDVGPVLEEFIPINRYGVSDSEQQQQQLQRQQQLPCETQTENTDDSDRNNLNLCPSDWLRSAQLWKDPSALNQDLPEKTAVVEVKSNGGAFRPFQKEKTGGGGTSSTSAPAATSSTAEMGSGGSNRREEKEAQNQRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSTTMHHDDTSQTPQFLVVGGIWVPAAEYATTSTGEAVRAATRNGMYAPVVRTTAQGLASTVAKAKAIVSGGAAECNSATTSSSTHTSSVSPA 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14682230 14684129 - Cp4.1LG01g17980.1 Cpe01g01799 463112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01799 362 MobiDBLite consensus disorder prediction 160 214 - -
Cpe01g01799 362 SUPERFAMILY Homeodomain-like 209 269 IPR009057 -
Cpe01g01799 362 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 18 358 IPR044787 GO:0003700|GO:0006355
Cpe01g01799 362 MobiDBLite consensus disorder prediction 197 214 - -
Cpe01g01799 362 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 211 266 IPR006447 GO:0003677
Cpe01g01799 362 MobiDBLite consensus disorder prediction 173 196 - -
Cpe01g01799 362 Gene3D - 210 268 - -
Cpe01g01799 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 268 IPR017930 -
Cpe01g01799 362 MobiDBLite consensus disorder prediction 93 126 - -
Cpe01g01799 362 PANTHER TRANSCRIPTION FACTOR HHO2 18 358 - -
Cpe01g01799 362 Pfam Myb-like DNA-binding domain 213 264 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01351 Cpe-Chr1:8123300 Cpe01g01799 Cpe-Chr1:14682230 3.16E-96 dispersed
Cpe01g01799 Cpe-Chr1:14682230 Cpe09g00276 Cpe-Chr9:1632809 3.46E-82 dispersed
Cpe01g01799 Cpe-Chr1:14682230 Cpe13g00409 Cpe-Chr13:4437223 4.84E-165 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48891 PF00249 Myb_DNA-binding 1.60E-06 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01799 - - cpep:111786881 493.041