Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01799 ATGATTTTCTCCCACAAAATGCAACAAATTGCATTTCAAATGGGTTTCACTCTCTCCGATTTCGCTCTCACTTTGGAACAAGAGCGCCGTAAAGTCCTCATGTTCCAGCGCGAGCTCCCTCTCTGTTTGGAGATTGTTACTCGCGCCATTGATTGTTGTAGGCATCACGTGTCGGAGACCACGACGGAGAATCGTCTATCGGAGTGTTCGGAGCAGACTTCCAGTGACGTGGGTCCGGTTCTTGAGGAGTTTATTCCGATTAATAGATATGGGGTTTCTGATTCTGAACAACAACAACAACAACTACAACGACAACAACAACTGCCCTGTGAAACTCAAACGGAGAACACTGACGACTCTGATCGAAATAATTTGAATTTGTGTCCGTCGGATTGGCTCAGATCTGCCCAGCTTTGGAAGGATCCTTCTGCCTTGAATCAGGACCTGCCGGAGAAGACGGCTGTTGTTGAGGTCAAGAGTAATGGCGGAGCTTTCCGGCCATTTCAGAAGGAGAAAACCGGTGGCGGAGGAACGTCATCGACTTCGGCTCCGGCTGCGACGAGCTCCACTGCGGAAATGGGGTCCGGTGGAAGTAATCGACGGGAAGAAAAAGAAGCGCAGAATCAGAGGAAACAAAGACGGTGCTGGTCACCGGAGCTACACCGGCGATTCCTTCATGCTCTTCAACAGCTCGGAGGTTCCCATGTGGCGACGCCGAAGCAAATCAGAGAGTTGATGAAGGTGGATGGCCTTACCAACGACGAAGTGAAAAGTCATTTACAGAAATATCGTCTACACACGAGACGCCCAAGTACAACAATGCACCACGACGACACCTCCCAGACGCCGCAGTTCCTGGTTGTGGGCGGCATATGGGTACCGGCTGCGGAGTACGCCACCACATCCACCGGAGAAGCAGTGAGAGCAGCCACCAGGAACGGAATGTATGCACCGGTGGTTAGGACGACGGCACAGGGATTAGCGAGTACAGTGGCGAAGGCGAAGGCTATAGTATCTGGGGGTGCGGCGGAGTGTAATTCTGCTACTACATCGTCCTCCACACATACGTCATCAGTTTCACCTGCTTGA 1089 51.79 MIFSHKMQQIAFQMGFTLSDFALTLEQERRKVLMFQRELPLCLEIVTRAIDCCRHHVSETTTENRLSECSEQTSSDVGPVLEEFIPINRYGVSDSEQQQQQLQRQQQLPCETQTENTDDSDRNNLNLCPSDWLRSAQLWKDPSALNQDLPEKTAVVEVKSNGGAFRPFQKEKTGGGGTSSTSAPAATSSTAEMGSGGSNRREEKEAQNQRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSTTMHHDDTSQTPQFLVVGGIWVPAAEYATTSTGEAVRAATRNGMYAPVVRTTAQGLASTVAKAKAIVSGGAAECNSATTSSSTHTSSVSPA 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14682230 14684129 - Cp4.1LG01g17980.1 Cpe01g01799 463112

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01799 362 MobiDBLite consensus disorder prediction 160 214 - -
Cpe01g01799 362 SUPERFAMILY Homeodomain-like 209 269 IPR009057 -
Cpe01g01799 362 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 18 358 IPR044787 GO:0003700|GO:0006355
Cpe01g01799 362 MobiDBLite consensus disorder prediction 197 214 - -
Cpe01g01799 362 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 211 266 IPR006447 GO:0003677
Cpe01g01799 362 MobiDBLite consensus disorder prediction 173 196 - -
Cpe01g01799 362 Gene3D - 210 268 - -
Cpe01g01799 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 268 IPR017930 -
Cpe01g01799 362 MobiDBLite consensus disorder prediction 93 126 - -
Cpe01g01799 362 PANTHER TRANSCRIPTION FACTOR HHO2 18 358 - -
Cpe01g01799 362 Pfam Myb-like DNA-binding domain 213 264 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01799 - - - cpep:111786881 493.041
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01351 Cpe-Chr1:8123300 Cpe01g01799 Cpe-Chr1:14682230 3.16E-96 dispersed
Cpe01g01799 Cpe-Chr1:14682230 Cpe09g00276 Cpe-Chr9:1632809 3.46E-82 dispersed
Cpe01g01799 Cpe-Chr1:14682230 Cpe13g00409 Cpe-Chr13:4437223 4.84E-165 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe03g01593 CST 12 269 G2-like Transcription Factor Family AT3G24120 61.7 5.3e-77 285.0
Cpe08g00397 CST 12 335 G2-like Transcription Factor Family AT3G24120 53.2 4.5e-76 282.0
Cpe15g00910 CST 18 162 G2-like Transcription Factor Family AT3G24120 58.5 1.5e-39 160.6
Cpe15g00178 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 2.4e-37 153.3
Cpe19g00909 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.4e-37 153.3
Cpe15g00191 . 154 356 G2-like Transcription Factor Family AT5G16560 52.2 2.6e-42 170.2
Cpe05g00160 . 168 353 G2-like Transcription Factor Family AT5G16560 53.8 2.9e-41 166.8
Cpe07g00452 CCT,CST 13 152 G2-like Transcription Factor Family AT5G42630 58.3 3.1e-37 152.5
Cpe13g00409 CCT 20 255 G2-like Transcription Factor Family AT1G25550 50.6 3.6e-51 199.1
Cpe01g01799 . 24 261 G2-like Transcription Factor Family AT1G25550 52.2 2.5e-44 176.4
Cpe01g01799 . 24 261 G2-like Transcription Factor Family AT3G25790 51.8 1.0e-36 151.0
Cpe10g01100 . 1 303 G2-like Transcription Factor Family AT5G05090 54.4 2.2e-74 276.2
Cpe19g00248 . 1 299 G2-like Transcription Factor Family AT5G05090 53.9 2.3e-71 266.2
Cpe08g01347 . 1 288 G2-like Transcription Factor Family AT5G05090 52.3 9.6e-70 260.8
Cpe03g00415 . 1 265 G2-like Transcription Factor Family AT5G05090 57.9 4.5e-67 251.9
Cpe03g01593 CST 12 313 G2-like Transcription Factor Family AT4G13640 56.5 9.0e-61 231.1
Cpe03g01593 CST 12 269 G2-like Transcription Factor Family AT3G24120 61.7 5.3e-77 285.0
Cpe08g00397 CST 12 335 G2-like Transcription Factor Family AT3G24120 53.2 4.5e-76 282.0
Cpe15g00910 CST 18 162 G2-like Transcription Factor Family AT3G24120 58.5 1.5e-39 160.6
Cpe15g00178 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 2.4e-37 153.3
Cpe19g00909 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.4e-37 153.3
Cpe11g00707 . 7 200 G2-like Transcription Factor Family AT1G69580 50.5 4.7e-37 152.5
Cpe05g01028 CST 1 160 G2-like Transcription Factor Family AT1G79430 75.3 3.9e-58 222.6
Cpe08g00397 CST 26 196 G2-like Transcription Factor Family AT1G79430 56.5 1.5e-38 157.5
Cpe03g01593 CST 41 205 G2-like Transcription Factor Family AT1G79430 59.4 6.5e-37 152.1
Cpe10g00724 . 84 317 G2-like Transcription Factor Family AT2G01060 51.6 6.2e-52 201.4
Cpe10g01100 . 1 303 G2-like Transcription Factor Family AT3G10760 60.7 4.4e-88 322.0
Cpe19g00248 . 1 299 G2-like Transcription Factor Family AT3G10760 61.9 4.4e-88 322.0
Cpe08g01347 . 1 288 G2-like Transcription Factor Family AT3G10760 59.5 6.0e-85 311.6
Cpe03g00415 . 1 278 G2-like Transcription Factor Family AT3G10760 56.7 8.6e-76 281.2
Cpe08g01347 . 1 287 G2-like Transcription Factor Family AT2G40970 50.5 3.4e-61 232.3
Cpe19g00248 . 1 204 G2-like Transcription Factor Family AT2G40970 61.6 5.5e-59 224.9
Cpe03g00415 . 1 195 G2-like Transcription Factor Family AT2G40970 59.4 9.3e-59 224.2
Cpe10g01100 . 1 203 G2-like Transcription Factor Family AT2G40970 58.8 1.2e-58 223.8
Cpe05g00834 . 108 367 G2-like Transcription Factor Family AT4G28610 50.2 6.2e-52 202.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004323 2 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48891 PF00249 Myb_DNA-binding 1.60E-06 CL0123 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01799 Cpe_Chr01 FPKM 16.188509 17.136183 13.218663 13.926308 21.269135 19.9184 19.931463 27.243048 24.707535 24.381195