Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01827 ATGGCGGCCTCCGCTCAACAGACTCCTTTCTTACGCTCCCGTCAGCCTTCCAACACTGACGGCTCTACTTCCCCCATCGGCCCCCTCGCCGTTCTCTTGGGCCGTGCCACTGGCCGCCGTGGAACTTCTATGGTAGTACGAGAGACGGCGGCACGTGAACTTGAAGAGCGCCGCATCGATTGGGGCTACTCCAAGCCGGTTGTGGCGGTTGACATTGCGTGGAATTTGGCTTTCGTTTTCGTTTCGTTGGGTGTGCTTATTCACTCGGTCGATGAAAAACCCAATACGCCAATTCGGCTTTGGATTTTAGTTTATGTGGCTCAGTGTTTGGTGCACTCTGTGCTTGTGTGGTTAGAGTTTAGAAGGAGGAATGCGAGGAGGGCTATGGATATGGAGACGCCGCAACACCCGCAACCTGATATTGACGGATATTTTTCTAATGAAAGCAATGACGAAGATGGTAGCCCGAGGAGTCTGTCCGGTGTTGCCAGAAGATGTGAGACCGTGAACACCTTGGTATCGTTACTTTGGTGGTTGCTTGGCTTTTATTGGGTCATGGCTGGTGGTAACCTCCTCCTGCAGAATGCTCCATCTTTATACTGGCTGGCTGTCGTATTTCTGGCATTTGATGTGTTCTTTGCCATCTTTTGTGTTGTTTTGGCATGTTTGATTGGAATAGCTCTCTGTTGCTGCTTGCCTTGCATTATAGCTATTCTTTATGCTGTTGCAGGCCAGGAAGGTGCAACTGAGGCAGATTTAAGTACTCTTTCTAAGTATAGATATCAAGTATCCAACAATCCTTCTCCCGGGGACGGGTTGATGGTTCCAATAGAAACAAGCAGCCGATACTTGACGACTGAACATGTTCTATTACGAGAGGATGCGGAGTGTTGTATATGTCTTAGTTCATACGAGGACGGAGTCGAGCTTCATGCTCTTCCCTGTAATCACCATTTTCATTACTCGTGTAGCACAAAATGGCTGAAGATGAATGCAACCTGCCCTCTNCGAGCTTCATGCTCTTCCCTGTAA 1032 48.84 MAASAQQTPFLRSRQPSNTDGSTSPIGPLAVLLGRATGRRGTSMVVRETAARELEERRIDWGYSKPVVAVDIAWNLAFVFVSLGVLIHSVDEKPNTPIRLWILVYVAQCLVHSVLVWLEFRRRNARRAMDMETPQHPQPDIDGYFSNESNDEDGSPRSLSGVARRCETVNTLVSLLWWLLGFYWVMAGGNLLLQNAPSLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGATEADLSTLSKYRYQVSNNPSPGDGLMVPIETSSRYLTTEHVLLREDAECCICLSSYEDGVELHALPCNHHFHYSCSTKWLKMNATCPLRASCSSL 343
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 15552484 15558591 + Cp4.1LG01g18270.1 Cpe01g01827 463140
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01827 343 MobiDBLite consensus disorder prediction 129 159 - -
Cpe01g01827 343 Pfam Ring finger domain 296 336 IPR001841 -
Cpe01g01827 343 SUPERFAMILY RING/U-box 283 336 - -
Cpe01g01827 343 MobiDBLite consensus disorder prediction 1 25 - -
Cpe01g01827 343 ProSiteProfiles Zinc finger RING-type profile. 297 336 IPR001841 -
Cpe01g01827 343 MobiDBLite consensus disorder prediction 140 156 - -
Cpe01g01827 343 MobiDBLite consensus disorder prediction 1 27 - -
Cpe01g01827 343 PANTHER E3 UBIQUITIN PROTEIN LIGASE RIE1-LIKE 5 336 - -
Cpe01g01827 343 SMART ring_2 297 337 IPR001841 -
Cpe01g01827 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 342 IPR013083 -
Cpe01g01827 343 PANTHER TARGET OF ERK KINASE MPK-1 5 336 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cpe01g01827 Cpe13g00346 CCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01827 Cpe-Chr1:15552484 Cpe08g00793 Cpe-Chr8:6289601 3.08E-103 dispersed
Cpe01g01827 Cpe-Chr1:15552484 Cpe13g00346 Cpe-Chr13:3434254 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01827 - K13148 cmo:103504433 551.592