Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01835 ATGGGTGATGTGAAGGACAAGGTTAAGGGCTTCATGAAACGCTTCAATAATCCCTTGTCCTCATCTTCTTCTACCAGTTTCAAGGGCCAGGGAAGAGTTTTAGGATCGTCTTCTTCCGGGTCGACCACTTCTTTGCCTACCCGCCCATTGCACAATCCCATTTCAAACCCGGATCTGGTCAAGCCCCCGGTTGCGAATTCAATTTCCGCGCCTCCAACCCGGCCACATCTCTCGATTAAATCGAGCCCAGAACGTTCCCCGGCTGATGGATTTGACCCATTTGACTCGTTTATAACATCTGGGAAAAAATCTGGAAATGGGTATTCGTTAAATGTGTTCGAATGTCCGATTTGTGGCCAAAATTACAGGTCGGAAGAAGAGGTTTCGGTGCACGTAGATAGCTGTGTCGATGATAATACAGCCAGGAGCCCAGCAGATCTGCTACTCACAAATGATGCAGAATCCCCGAGTGAATTGGAGGGTTGTCTTGGCACTTTCTTGTCAGGTAAGCCATCACAAGGTTCACTGAAAATTATTCTTACGCTTTTGAGGAACATAATACGGGAACCAGAGAATTCAAAGTTTAGGAAGATTCGTCTGAGTAATCCCAAAATTAAGGAGGCAATTGGCGAGGCTGTCGGGGGAGTGGAATTGTTGGAGTTTGTAGGTTTTAAATTGCAAGAACAAGATGGTGAAATGTGGGCTACCATGGAAGTTCCAACAGAGGAAGAAATTAACATACTAGGTAAGGTAATAGATTCCATTGATCAACCAAAGCTTGATGAACAGGAAAAGAAAGGCAGCAGCACTGCATCCACTGATCAACTAATTGAACCAAAGAAGGTAGACAGACAGACTCGGGTATTCTTTGCAATCCCTGAAAACGTTGCAGCAAACATCGAGCTACCAGACTCATTTTACAAACTCTCTGTTGAAGAGGTTAAAAGAGAAGCTGTGATGAGGAAGCAAAAGATTGCTGAATCTCAGCTTTTGGTACCCAAATCATACAAGGAAAAGCAAGCCAAAGCTGCTCGGAGAAAGTACAATAGAACAGTGATCAGAATTCAGTTTCCTGATGGTGTGGTACTTCAAGGGGTTTTTTCTCCTTGGGAACTAACAAGTGCTCTATATGAGTTTGTGAGCACAGCACTGAAAGAACCGAGTTTGGAGTTCGAGTTGATACAACCTGTCGGTGTTAAACGACGTACAATCGCACATTTTCCAGCAGTAGGAGAGAAAGCTAAAACACTAGATGATCTGGAGTTGGTTCCCTCAGCTCTTGTCAAGTTTAGACCCATTGAAACAGATGCTGTTGTGTTCACTGGTTTGTGTAATGAACTCCTTGAGATCATTGAACCACTCGTTAGCGGTTCAGCGGTAGCTCCTCCTGCACAAGGTTAA 1401 44.4 MGDVKDKVKGFMKRFNNPLSSSSSTSFKGQGRVLGSSSSGSTTSLPTRPLHNPISNPDLVKPPVANSISAPPTRPHLSIKSSPERSPADGFDPFDSFITSGKKSGNGYSLNVFECPICGQNYRSEEEVSVHVDSCVDDNTARSPADLLLTNDAESPSELEGCLGTFLSGKPSQGSLKIILTLLRNIIREPENSKFRKIRLSNPKIKEAIGEAVGGVELLEFVGFKLQEQDGEMWATMEVPTEEEINILGKVIDSIDQPKLDEQEKKGSSTASTDQLIEPKKVDRQTRVFFAIPENVAANIELPDSFYKLSVEEVKREAVMRKQKIAESQLLVPKSYKEKQAKAARRKYNRTVIRIQFPDGVVLQGVFSPWELTSALYEFVSTALKEPSLEFELIQPVGVKRRTIAHFPAVGEKAKTLDDLELVPSALVKFRPIETDAVVFTGLCNELLEIIEPLVSGSAVAPPAQG 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15607781 15610835 + Cp4.1LG01g18340.1 Cpe01g01835 463148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01835 466 Gene3D - 168 258 - -
Cpe01g01835 466 SUPERFAMILY PUG domain-like 172 235 IPR036339 -
Cpe01g01835 466 ProSiteProfiles UBX domain profile. 346 430 IPR001012 GO:0005515
Cpe01g01835 466 SMART PGNneu 174 241 - -
Cpe01g01835 466 Gene3D - 340 432 - -
Cpe01g01835 466 CDD UBX_UBXN6 351 431 - -
Cpe01g01835 466 SUPERFAMILY Ubiquitin-like 317 430 IPR029071 -
Cpe01g01835 466 Pfam UBX domain 347 428 IPR001012 GO:0005515
Cpe01g01835 466 SMART ubx_3 343 432 IPR001012 GO:0005515
Cpe01g01835 466 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 456 - -
Cpe01g01835 466 SMART c2hc_5 112 136 IPR006642 GO:0003677|GO:0006281
Cpe01g01835 466 Pfam PUB domain 173 238 IPR018997 -
Cpe01g01835 466 MobiDBLite consensus disorder prediction 15 51 - -
Cpe01g01835 466 CDD PUB 163 257 - -
Cpe01g01835 466 MobiDBLite consensus disorder prediction 1 93 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g01835 Cpe13g00353 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01835 Cpe-Chr1:15607781 Cpe11g00595 Cpe-Chr11:3562436 3.69E-08 dispersed
Cpe01g01835 Cpe-Chr1:15607781 Cpe13g00353 Cpe-Chr13:3569584 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01835 K14011 - csv:101209321 737.258