Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01841 ATGGCTGCCAACAGATTCGCCACCCTCTTACACAGAAACTCCAACAAGATCACCCTTATTTTAGTCTACGCCCTTCTCGAATGGGTTCTCATCTTTCTTCTTCTTCTTCAAGCTCTTTTTTCTTACCTGATTATTAAATTTGCTGAGTTGTTTGGTTTGAAGCGCCCCTGTTTGTGGTGTTCTAGAGTCGACCATGTGTTCGAGCCTGGGAAGAAGTTTTCTTACAGAGATCTTCTTTGTGAACCTCATGCTATGGAGATTTCTAATCTGGGTTACTGTTCGAATCATCGCAAACTTACTGAGGTTCGAGATTTGTGCGAGGATTGCTTCTCCTCTTCTAATCCCAACGAGTTCTATCAGATTCCTAAGAACTTTGCCTTTTTTGGTGATGAGAAGGAGGATTTTAGGTGCTGTTCTTGCTGTGGGGAGAGCTTGAAGAATCGGTTGTTTTCCCCTTGTATTTTGATTAAGCCCAATTGGGGGGATTTGGATTATGCCCACAAGGGGAATTTGATTTCTGAAGCGGACATTGATGTTCAATCTGATGAAATCCATGCTTCCCCCACGGAAGATATCATCGGAAATAGGGAAATCTCCATTGTTTCCGGTGGGGAACAGGCTGAGAAGAACTCCGGTTGCTCTGTTTGTGGTTGTTGCTGTAAAGTTTCGGCGGTTCATGAGGAGGAGAAGGAGGAGGAGGATAAAGCTAAAATGGGTGGTGAAAAGGACGGAGATTTTCTTGAACTGGCTGAAGATCTGAGCTCTCTTAATCACAAAACTGTTCAACTCGGTTGTGTGAGAGAGAATGAATCGGCTGAGACTGCCCCTCATCATCTTGAGTTTTACATTGACCGGGGCAATGATCGGCGGTTGATTCCAGTTGATTTGATCGATTTTTCAGCCTCCGATCACAACAACAACGAAAGCAATATCCTAAGTTCAGTGAAAGATGAGGAACAAGAACAAGAACCAGAACCAGAACCAGAACAAGAACAAGAACAAGAACAAGAACAAGATCAAGAACAACAACAAGAGGATTGTGGGAATGAAGATGTTGTTCTGGATTTTGGTTCCAACTTTGAGAAGCAGGGACAAGATGTGACAGAAGATTGGGAAGTTATTTCAGGAGAGAGATTGGCAGAGTTTCTCTCTGTTTCTCTCCATGAGAGCAAGCAGAAAGTTGCAGAGGTGGAAGCCATGAAGGTGGAGGAGGGTAGCACAAGGGCCTCTGGGTTGGGTTCAGATGAAGATCCATCAATGGAAGTAGAAGAGCAAGAAATAGAAGAACAAGAGCAAGAAATAGAAGAACAAGAGCAACAAATAGAAGAACAACAGCAAGAAATAGAAGAACAAGAGCAAGAAATAGAAGAAGCTGAAGCTTCCATTGGTGAAGCAATTCAAGCTCCAGCCATTGATGATGCTCACGAAGAAGACCTTGCAGAATTGGTGCTAGATTCAGATCTTCATCAAGATATTCACGAGTGGAATGATGAACATGAAGTAGAGATTTCAATCGGGACGGATATTCCCGATCACGAACCGATCGATGAGATTCAAACTCAAAACGACATTCCTTCACATCCCAATGTTCAAGAAGATCCTTCCCCAACTTCAACATTGGTAGTTGATGACAATATGCAAGATTATAACAAAGCTGAGAAATCCGAGGAAGCTGAGGACACTAAGGAAGAGGTAGAGTTCAAGATATTGTCCGTGGAAACGAGTTCTCAACCGTCAGACAATCACAAACCGTCGAGGTCTGAGTTCAATGAGAATGAGGAAGAAGATAAAGTTCCTGATACACCAACTTCAATGGATAGTCTCCACCAGCTACACAAGAAGCTGCTATTACTAGACAGAAAAGAATCTGGAGCCGAAGAGTCGTTGGATGGGAGCGTGATTAGCGAGACTGAAAGCGGGGATGGAGTATTGACGATTGAGAAATTGAAGTCGGCGTTGAGAACCGAACGAAAGGTTTTGAATGCCTTATATTCAGAGCTAGAAGAAGAGAGAAGTGCTTCTGCCATAGCAGCCAACCAGACAATGGCAATGATAAATAGGCTTCAAGAGGAGAAAGCAAGCATGCAAATGGAAGCTTTACAGTACCAAAGAATGATGGAAGAACAATCTGAATATGACCAGGAAGCTTTACAGCTTTTGAACGAGCTCGTGGTGAAGAGAGAAAAGGAAAAGCAAGAGCTCGAGAAAGGAATCGAAGTTTACCGAAAAAAGCTTCAAGATTATGAAGCCAAAGAGAAAATGGCATTGTTAAGGAGCAGGAAAGAAGGGAGCATCCAAAGTAGAAATTCCTCGGTTTCTTGTAGCAATGCCGATGATAGCGATGGGCTATCGATCGATTTGAACACCGAGGCAAAGAAAGATGAAGATTTGTTTTGTAACCAAGAAACAAACAATCAAAACACCCCAGCTGAGGCAGTTCTTTATTTGGAAGAAACATTAGCAAACTTTGAGGAAGAAAGACTGTCCATTCTAGAGGAGCTGAAGATGTTGGAAGAGAAGCTCTTTACATTGAGTGATGAAGAACAACAATTTGATGACATTGAGCATTACAGTGAACATAATGGCAATGGCTACCATAAGAACTCGGATTCTGTTTCTGAAACAAATGGATTCGAAAACGGTCATCATGTCAAGGAAATGAATGGAAACCATCATCCAGGGAAGAGAACGATGAGCACGAAAGCCAAAAGACTTCTTCCTCTTTTCGACGATGCAGTCGATACAGACGTTGAAGATGTAACCATTGGAGAAGAACAAGGGTTCGACTCTGTTTCAATGCAGAAGTCCTTAGACAACAAATTCGACACGGAGTTCAGGAGGGTTGCTGTTGAGGAAGAAGTGGATCACGTGTATGAGAGATTACAAGCACTTGAAGCAGATAGGGAGTTTCTAAAGCATTGCATTGGCTCCCTAAGAAAAGGAGACAAAGGCTTAGAGCTTCTCCAAGAAATCTTACAGCATCTCCGAGATCTAAGGAGCGTCGATATCCAGTTGAAAAATATGGGAGACGGTGTCGTAGCATGA 3045 42.76 MAANRFATLLHRNSNKITLILVYALLEWVLIFLLLLQALFSYLIIKFAELFGLKRPCLWCSRVDHVFEPGKKFSYRDLLCEPHAMEISNLGYCSNHRKLTEVRDLCEDCFSSSNPNEFYQIPKNFAFFGDEKEDFRCCSCCGESLKNRLFSPCILIKPNWGDLDYAHKGNLISEADIDVQSDEIHASPTEDIIGNREISIVSGGEQAEKNSGCSVCGCCCKVSAVHEEEKEEEDKAKMGGEKDGDFLELAEDLSSLNHKTVQLGCVRENESAETAPHHLEFYIDRGNDRRLIPVDLIDFSASDHNNNESNILSSVKDEEQEQEPEPEPEQEQEQEQEQDQEQQQEDCGNEDVVLDFGSNFEKQGQDVTEDWEVISGERLAEFLSVSLHESKQKVAEVEAMKVEEGSTRASGLGSDEDPSMEVEEQEIEEQEQEIEEQEQQIEEQQQEIEEQEQEIEEAEASIGEAIQAPAIDDAHEEDLAELVLDSDLHQDIHEWNDEHEVEISIGTDIPDHEPIDEIQTQNDIPSHPNVQEDPSPTSTLVVDDNMQDYNKAEKSEEAEDTKEEVEFKILSVETSSQPSDNHKPSRSEFNENEEEDKVPDTPTSMDSLHQLHKKLLLLDRKESGAEESLDGSVISETESGDGVLTIEKLKSALRTERKVLNALYSELEEERSASAIAANQTMAMINRLQEEKASMQMEALQYQRMMEEQSEYDQEALQLLNELVVKREKEKQELEKGIEVYRKKLQDYEAKEKMALLRSRKEGSIQSRNSSVSCSNADDSDGLSIDLNTEAKKDEDLFCNQETNNQNTPAEAVLYLEETLANFEEERLSILEELKMLEEKLFTLSDEEQQFDDIEHYSEHNGNGYHKNSDSVSETNGFENGHHVKEMNGNHHPGKRTMSTKAKRLLPLFDDAVDTDVEDVTIGEEQGFDSVSMQKSLDNKFDTEFRRVAVEEEVDHVYERLQALEADREFLKHCIGSLRKGDKGLELLQEILQHLRDLRSVDIQLKNMGDGVVA 1014
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15665425 15670092 + Cp4.1LG01g18370.1 Cpe01g01841 463154

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01841 1014 PANTHER MYOSIN-BINDING PROTEIN 3 1 1010 - -
Cpe01g01841 1014 Coils Coil 420 468 - -
Cpe01g01841 1014 Pfam Zein-binding 648 736 IPR007656 -
Cpe01g01841 1014 ProSiteProfiles GTD-binding domain profile. 644 742 IPR007656 -
Cpe01g01841 1014 Coils Coil 820 840 - -
Cpe01g01841 1014 MobiDBLite consensus disorder prediction 547 569 - -
Cpe01g01841 1014 Coils Coil 947 967 - -
Cpe01g01841 1014 Coils Coil 678 751 - -
Cpe01g01841 1014 PANTHER MYOSIN-BINDING PROTEIN 2 1 1010 IPR039306 GO:0017022
Cpe01g01841 1014 MobiDBLite consensus disorder prediction 508 605 - -
Cpe01g01841 1014 MobiDBLite consensus disorder prediction 584 602 - -
Cpe01g01841 1014 MobiDBLite consensus disorder prediction 314 364 - -
Cpe01g01841 1014 MobiDBLite consensus disorder prediction 398 474 - -
Cpe01g01841 1014 MobiDBLite consensus disorder prediction 320 348 - -
Cpe01g01841 1014 MobiDBLite consensus disorder prediction 417 459 - -
Cpe01g01841 1014 Coils Coil 650 670 - -
Cpe01g01841 1014 MobiDBLite consensus disorder prediction 519 545 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01841 - - - cmax:111486936 1736.08
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01841 Cpe13g00361 CCT
Cpe01g01841 Cpe13g00361 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01841 Cpe-Chr1:15665425 Cpe07g00971 Cpe-Chr7:8771735 1.04E-23 dispersed
Cpe12g01079 Cpe-Chr12:8965126 Cpe01g01841 Cpe-Chr1:15665425 1.43E-22 dispersed
Cpe17g01102 Cpe-Chr17:8365175 Cpe01g01841 Cpe-Chr1:15665425 4.50E-20 dispersed
Cpe14g00233 Cpe-Chr14:1339151 Cpe01g01841 Cpe-Chr1:15665425 5.96E-15 transposed
Cpe01g01841 Cpe-Chr1:15665425 Cpe13g00361 Cpe-Chr13:3893792 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g461 . . . . . . . . . . . . . . . . Cpe01g01841 . . . . . . . . . . . . . . . . Cone6ag0387 Cone9ag0414 . Csa05g02013 . . . Blo11g00974 . . . . . . . . Cmo15g01004 . Cma15g00963 . Car15g00909 Cpe13g00361 . Bhi12g00920 . . . . . . Cla01g00620 Cam01g0648 Cec01g0640 Cco01g0666 Clacu01g0636 Cmu01g0609 Cre09g1892 Lsi09g00670 . Chy09g00840 Cme09g01372
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006446 1 3 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01841 Cpe_Chr01 FPKM 44.14542 45.123665 40.145161 38.88649 36.715427 34.897507 34.674122 44.075207 49.135288 44.847408