Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01842 ATGAACTGCTCCCTTGGCCTCCACATCCCCAAGGCCCTGCCTTCTCTCTCCTCTTCCAAAACCATCTCTCCTTTTCTCTCCGCCCCCTTTAAGCTCCTCAAATTGCCATCCAAGCCAACCTCCATTAATTTTCAGGTGGTGGCAAGCATCAGAGAAGACCCCATTGCCTTTCTTCGCCAAAAGAAAACCAGTTTGTCTCTTCAATTTGCTGCCCTTTTAGCCACTGTTGCGGAGCCGGCAACTGCTGTAACAGGGGACAACAACCATGAGGTTCCACTGACATGGATTTTGACACAATTAGGCATTGTTGGATTCTTTTACTTCCTTGTCTTTCCACCAATCATCATGAACTGGTTGAGGATAAGATGGTATAGAAGAAATTTGTTGGAAATGTATGTCCAATTCATGTGCGTCTTCCTTTGCTTCCCTGGCATTCTATTGTGGGCGCCATTTCTGAACTTCAGAAAGTTCCCACGAGATCCATCGATGAAGTATCCATGGTCGACGCCCCAAGAGCCGTCTCAGATCAAAAATGGATACTTGAAGTACCCATTTGCCAAGCCTGAAGATTACGACTGGTAA 582 46.39 MNCSLGLHIPKALPSLSSSKTISPFLSAPFKLLKLPSKPTSINFQVVASIREDPIAFLRQKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGYLKYPFAKPEDYDW 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15673876 15675304 - Cp4.1LG01g18410.1 Cpe01g01842 463155

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01842 193 Pfam NADH dehydrogenase transmembrane subunit 88 160 IPR019654 GO:0016655
Cpe01g01842 193 PANTHER NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT L, CHLOROPLASTIC 1 192 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01842 - - - csv:101218173 322.013
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g457 . . . . . . . . . . . Cma04g00104 . . . . Cpe01g01842 . . . . . . . . . . . . . . . . Cone6ag0389 . . Csa05g02015 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy09g00843 Cme09g01375
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014135 1 1 0 0 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 0 0 1 0 0 1 1 1 2 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01842 Cpe_Chr01 FPKM 2.886989 3.236797 1.42703 1.126101 8.439539 7.997345 9.312723 0.592448 0.374729 0.767972