Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01856 CCTCTTCCGGCAATGGCTCTCCCTCCCCTTGAGTGTATGTATGTCGTTGAAAGCAATCTTCGCGAATGGAAGTCCGGAAACTCGAGCTTTAGGGTTCCCAACCCTGTCCCTGTGCTTCGCTTCCTTTACGAGCTTTGCTGGACCATGGTTCGAGGTGAATTGCCGTTCCAGAAGTGTAAAGCAGCATTGGATTCAGTAGAGTTCACGGGCAAAATGTCTGCGGAGGAGTTAGGATCGAGTTTTGCTGATGTCATTACCCAATTGGCCCAAGATATCACATTACCCGGAGAGTATCGTGTTCGTCTTTTAAAATTGAATGGAGACCACCATTCCAACCCAAACTTTATCTCCAAGATCAACAATTCAATGTTTGCTGTCGTGGGAGAAGAGAGAACTCTTGAACCTCAAGTGCAACCAAATCAAGATTGTGAATCCTGTTGCAAGCTAGCCGCAGAAGAAAGAATTCAGAATCAGGAAGGGTTTAGAGAAATTATCAATCAGGGTCATCCACCTAGACAGGAAGATACACATCATGATTTTCATTCTTCAAGAGCTCGACTCAATCTGGCTGAAGGGGAGAAATATCGAAGTGCAAGGTATATATCTGGATTGAAGAAAGAAATTCAAGAAAAGGATAGAATTGTAACCGTTAGGGCTAAATGGCTGGTTGAATCTGCATTTGTTCCATTGAGGCTTTTTCAAGAACGGTGTGAGGAAGAATTTTTATGGGAGGCTGAAATGATAAAGATTAAGGCGCAGGAATTGAAAAGCAAAGAGGTCAGAGTAAATACTCGTCTTCTTTATCAGCAAACAAAGTTTAATCTTCTGCGTGAAGAAAGCGAGGGCTATGCCAAGTTGGTAACACTTCTTTGCCATGTCACTGACGCTTCAAATAACAATTTGCCGGGTTCAACAATTGGTATTATAAAGTCATTGATTGGGCATTTTGATTTGGACCCAAACCGTGTGTTTGACATTGTCTTGGAGTGTTTTGAACTTCAGCCAGAAAATAGTGTTTTTGTGGAGCTAATTCCAATATTTCCCAAGTCTCATGCTTCACAAATCCTTGGGTTCAAATTCCAATATTATCAGCGCATTGAAGTGAACTCGCCAGTGCCAGTTGGGCTTTATAAACTTGCAGCTTTACTAGTGAAGGAAAAATTTATTGATCTGGATAGCATATATGCACATCTACTTCCTAAGGAGGAGGAGGCATTTGAGCACTATGAGTCCTTTTCTTCCAAACGACTTGATGAGGCTAACAGAATAGGTAAAATAAATCTTGCGGCAACGGGAAAAGATCTAATGGATGATGAGAAGCAAGGAGATGTAAGCATTGATCTTTTTGCTGCTCTTGATATGGAAAGTGAGGCAGTCAATGAAAGGTCTCCAGAGCTGGAAAATAATCAAACATTGGGCTTGCTTACAGGATTTCTTTCTGTGGGTGACTGGTATCATGCACATGTACTGTTTAATCGGCTTTTACCTCTCAATCCAGTGGAACACCTTCCAATCTGTAACTGTTTGTTTAGGTTCATTGAAGAATCGATCTCCTCTGCGTACTCTATTGTTCGTCAACATTATTATCAGAGCTTTGGGACCTCTTCGGGAGCTAGCATTGATACCAGGAATTTTCCGGTTGGTGGTTCTTTTATAGATCTTCCTAGGGAACTTTTTCAGATGCTTGCAGCTGCTGGACCTTATCTCTACCGTGATACAATTTTGCTGCAGAAGGTCTGTAGGGTGCTGAGAGGTTATTATATGTCGGCAATTGAGTTTGTCAACAGTGTGGAAAGTGGTTCAAATCCTGAATTTGTTCTGCAAGCTGGTAGCCGGGTTCCTCATCTTCACTTGAAGGAAGCTAGATTGAAAATTGAGGAAGCTTTAGGAATGTGTATACTTCCTTCGTTACAGTTGATACCTGCCAATCCAGCTGTTGGTCAAGGAATATGGGAAGTAATGAATCTTCTTCCGTATGAGGTGCGGTATCGTTTATATGGTGAATGGGAGAAAGATGATGAGAAGATTCCAATGGTTTTGGCTGCAAGGCAAACCGCAAAGTTGGACACACGGAGGATTTTGAAGCGGTTGGCTAAGGAAAATTTGAAGCAATTGGGTAGGATGGTTGCAAAACTTGCTCATGCCAATCCGTTGACTGTCCTTCGCACTATATTACACCAGATTGAGGCATATAGGGATATGATTACTCCTGTAGTAGATGCATTCAAGTATCTGACTCAGCTTGAGTATGACATATTAGAATATGTTGTGATTGAACGTTTGGTGCAAGGAGGGCGTGATAAGTTGAAGGATGATGGCCTTAATCTGTCAGATTGGCTCCAGTCATTAGCTTCATTTTGGGGTCACCTGTGTAAGAAGTACCCATCTATGGAGCTAAGGGGTTTGTTTCAGTATCTCATTAATCAGTTGAAAAAAGGTCAAGGAATTGAACTTGTTCTCCTGCAGGAACTTGTTCAACAAATGGCCAATGTCCAATACACAGAAAACCTAACTGAGGAACAGTTGGATGCTATGGCAGGAAGTGAGACACTTCGTTATCAAGCAACTTCTTTTGGGGTTACTCGAAATAACAAGGTGGTTGTCATAAATGCAAATGCTCCTTATATTAAGATGGTCAGTGAACAATTTGATAGATGTCATGGAACTCTGCTTCAATATGTGGAATTTCTTAGTAGTGCAGTTACGCCTGCATCAGCTTATGCTCAGTTGATTCCCTCTCTCAATGAGCTTGCCCAGCTTTATCACCTAGATCCCGAGGTTGCTTTCCTGATATATCGACCAATAATGAGGTTATTTAAGTGTCAAGGTGGTTCAGATATCTTCTGGCCACTGGATGGCAATGATGCAAATGTTGCAAGCAATAATTCTGATTCGGAATCAGCAGAATGTTCTGCAGACGTTGTTTTGGAACTTGGTTCTTCACGGAAACCTGTGAGGTGGTCAGATCTCCTCGATGCTGTAAAGTCTATGTTACCTCCAAAAGCTTGGAATAGCTTGTCTCCAGATCTCTATACTACATTTTGGGGTCTCACGCTCTATGATCTTTATGTTCCTCAGAGTAGATATGAATCTGAAATTGCTAAGCAGCATTCTGCTCTTAAAGCTTTAGAAGAGCTTTCTGATAACTCAAGTTCTGCAATCAATAAAAGGAAGAAAGACAAAGAAAGAATTCAAGAATCTCTTGATCGCTTGTCCAATGAACTAAATAAGCATGAAGAAAATGTTGCTTCTGTACGCAGACGACTTTCTCGTGAAAAGGATAAATGGTTGAGCTCCTGCCCTGATACTTTGAAAATTAACATGGAGTTCCTTCAGCGATGTATTTTTCCCCGCTGTACATTCAGTATGCCTGATGCTGTCTATTGTGCTATGTTTGTGCACACTCTTCATTCCCTTGGAACACCATTTTTCAATACAGTCAACCATATTGATGTTTTGATATGTAAAACCTTGCAACCCATGATATGCTGCTGCACGGAATACGAAGCAGGCAGGCTTGGAAGGTTTTTATATGAGACACTAAAGATAGCTTATTATTGGAAGAGTGATGAATCCATTTATGAACGTGAATGTGGAAATATGCCTGGATTCGCTGTCTATTATAGGTATCCAAACAGTCAAAGAGTAACGTACGGCCAGTTCATCAAGGTTCATTGGAAGTGGAGTCAAAGAATTACACGATTACTCATACAATGCTTGGAATCTACAGAGTACATGGAAATTAGAAATGCTCTTATAATGTTGACAAAAATTTCCAACGTTTTTCCCGTCACAAGAAAAAGCGGAATCAACCTTGAGAAAAGGGTCGCTAAGATCAAAAGTGATGAAAGAGAAGATCTGAAGGTGTTAGCTACTGGTGTTGCCGCAGCCTTGGCTGCTAGAAAGCCTTCATGGGTTACAGATGAAGAATTTGGCATGGGTTATCTTGAATTAAAGACTGCACCTTCTCTTGCATCAAAGTCTTCAGCTAGTAATTTAGCTGCCAGCCAAAGTAATTCCATTTATTCTTCCCAAAATGAACATGGTGGAGGAAAGCCTACTGCCGTCCCAAGTTCAGATTCTGGAAATATGGCCAAAGACCATTCATTGAGGTCACGAACTTCCGACGTGAGGACGGATAAAATAGATGGTTTTTCTGTTCCAAAATCTGAACTAGGGCATGGGAAACTCAAAGGCACTTCATTGAACGGACCAGATTCCCAATCACTTGTGCCCTCAACTTCTGTGCATTCAGGATCGTCAAGAGTTGTGGAAGGTCAAAAACCAGGTGATGACTTAAGTAGGACTTCGAATGAAGGCTCATCAAAAGTTATTTTCAAGACCTCTTCTGAATCCGAGCAGTTGAGAGTTTCAGCAAAACGAAACGCACCTGCTGGGATTCTTAGTAAAGCACCAAAACAAGATACCACGAAAGATGAGATTAGATCTGGAAAAGCTGCTAGCAAGAATCATGGGTCTTCCACAAGTGATCGGGATCTTCCAATTCATGCAACGGATGGTGGTAGGCATGGAAGTTCTTATAAAACTTCTTCAGTTATGCCAAATGACTATACGCAAAGTTCATTAACTAGAGGCTTGTCCTCATCATTAAAAGCTTCAGATGGTCACGCTATTGAATTGAAGGCAGAGAGTGGAGTAGGGAGGACTTCTGATAGTAGGGCTTCGTCAGTAAAGGAAAATGGTACTGAAGCTCTTGAAGTTGCAAAATCCTCTTCTTCCAGACTTGCTCATTCTCCCAGACATGATAATTCTGCTAGTGGTTCTAGGTCTAGTGATAAACTGCCTAAAAGAGCTAGTCCTGCTGAAGAACCAGACAGACAAGGTAAACGTCGGAAAGGAGATGGTGAAAGTAGAGATGTAGATGGGGATTTTCGTAACCCTGACAAAGATAGATCCATAGACACACGATCTGTAGATGCTGATAAAATAGGAATGGATGAACAAAGTGGTTACAGAGGTTCAGATAAACCTCTGGATAGAACAAAAGATAAGGTAAATGAAAGATACGATAGGGACTACAAAGATCGGGCAGAGCGTTCTGAGAAATCCCGTGGAGATGATCCATCAGTAGAAAAAACAAGAGACAGATCAATAGAAAGATATGGAAGAGAACGCTCGGTTGAGAAAGTGGAAAGAGTTTCTGATAGGTATCCTGACAAATCTAAGGATGAAAGAGATAAAGATGATAGGAGTAAGTTACGATATAATGATACAGCTACAGAAAAGTCTCATGTTGATGATCGGTTCCACAGACAGAGCTTGCCTCCTCCCCCTCCCTTGCCTCCTCACGCGGTCCCTCAATCTGTTAATAGTGGGAGAAGAGAAGAAGATGCAGATAGAAGGTTTGGAACTACTAGACACAGTCAAAGGCTTTCTCCTAGACACGAAGAGAAGGAACGGAGACAATCAGAGGAAAATTTAATTTCACAGGATGATACAAAACGCAGAAGAGAGGAGGAATTTCGAGAAAGAAAGAGAGAAGAGAGAGAGGTGGGGATATCATTGAAGGTGGATGATAGGGAGAGGGAAAGGGAGAGGGACAAGGCAAACCTTTTGAAGGAGGACATGGACGCTGCTGCTGCCTCCAAGAGGCGAAAACTTAAAAGGGAGCATCTGTCATTGGCAGAGGCTGGTGAGTATTCTCCTGTTGGCGCACCGCCATCTCTGGTTGGTGGTGGCGTGTCTCAATCTTATGATGGACGAGAAAGAGGAGACAGGAAGGGTGTAATGATGCAACGTGCCAGTTACTTGGATGATCCAGGCTTGAGAATTCATGGTAAAGAAGTTGTCAACAAGATGACCAGACGTGAAGCCGATTTAATGTACGATCGGGAATGGGATGATGATAAAAGAATGAGGGCGGACCAAAAGCGGAGGCACCGGAAATAA 5910 42.05 PLPAMALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKAALDSVEFTGKMSAEELGSSFADVITQLAQDITLPGEYRVRLLKLNGDHHSNPNFISKINNSMFAVVGEERTLEPQVQPNQDCESCCKLAAEERIQNQEGFREIINQGHPPRQEDTHHDFHSSRARLNLAEGEKYRSARYISGLKKEIQEKDRIVTVRAKWLVESAFVPLRLFQERCEEEFLWEAEMIKIKAQELKSKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCHVTDASNNNLPGSTIGIIKSLIGHFDLDPNRVFDIVLECFELQPENSVFVELIPIFPKSHASQILGFKFQYYQRIEVNSPVPVGLYKLAALLVKEKFIDLDSIYAHLLPKEEEAFEHYESFSSKRLDEANRIGKINLAATGKDLMDDEKQGDVSIDLFAALDMESEAVNERSPELENNQTLGLLTGFLSVGDWYHAHVLFNRLLPLNPVEHLPICNCLFRFIEESISSAYSIVRQHYYQSFGTSSGASIDTRNFPVGGSFIDLPRELFQMLAAAGPYLYRDTILLQKVCRVLRGYYMSAIEFVNSVESGSNPEFVLQAGSRVPHLHLKEARLKIEEALGMCILPSLQLIPANPAVGQGIWEVMNLLPYEVRYRLYGEWEKDDEKIPMVLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANPLTVLRTILHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLVQGGRDKLKDDGLNLSDWLQSLASFWGHLCKKYPSMELRGLFQYLINQLKKGQGIELVLLQELVQQMANVQYTENLTEEQLDAMAGSETLRYQATSFGVTRNNKVVVINANAPYIKMVSEQFDRCHGTLLQYVEFLSSAVTPASAYAQLIPSLNELAQLYHLDPEVAFLIYRPIMRLFKCQGGSDIFWPLDGNDANVASNNSDSESAECSADVVLELGSSRKPVRWSDLLDAVKSMLPPKAWNSLSPDLYTTFWGLTLYDLYVPQSRYESEIAKQHSALKALEELSDNSSSAINKRKKDKERIQESLDRLSNELNKHEENVASVRRRLSREKDKWLSSCPDTLKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPMICCCTEYEAGRLGRFLYETLKIAYYWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQFIKVHWKWSQRITRLLIQCLESTEYMEIRNALIMLTKISNVFPVTRKSGINLEKRVAKIKSDEREDLKVLATGVAAALAARKPSWVTDEEFGMGYLELKTAPSLASKSSASNLAASQSNSIYSSQNEHGGGKPTAVPSSDSGNMAKDHSLRSRTSDVRTDKIDGFSVPKSELGHGKLKGTSLNGPDSQSLVPSTSVHSGSSRVVEGQKPGDDLSRTSNEGSSKVIFKTSSESEQLRVSAKRNAPAGILSKAPKQDTTKDEIRSGKAASKNHGSSTSDRDLPIHATDGGRHGSSYKTSSVMPNDYTQSSLTRGLSSSLKASDGHAIELKAESGVGRTSDSRASSVKENGTEALEVAKSSSSRLAHSPRHDNSASGSRSSDKLPKRASPAEEPDRQGKRRKGDGESRDVDGDFRNPDKDRSIDTRSVDADKIGMDEQSGYRGSDKPLDRTKDKVNERYDRDYKDRAERSEKSRGDDPSVEKTRDRSIERYGRERSVEKVERVSDRYPDKSKDERDKDDRSKLRYNDTATEKSHVDDRFHRQSLPPPPPLPPHAVPQSVNSGRREEDADRRFGTTRHSQRLSPRHEEKERRQSEENLISQDDTKRRREEEFRERKREEREVGISLKVDDRERERERDKANLLKEDMDAAAASKRRKLKREHLSLAEAGEYSPVGAPPSLVGGGVSQSYDGRERGDRKGVMMQRASYLDDPGLRIHGKEVVNKMTRREADLMYDREWDDDKRMRADQKRRHRK 1969
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15804509 15839860 - Cp4.1LG01g18580.1 Cpe01g01856 463169

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01856 1969 MobiDBLite consensus disorder prediction 1947 1961 - -
Cpe01g01856 1969 MobiDBLite consensus disorder prediction 1555 1600 - -
Cpe01g01856 1969 MobiDBLite consensus disorder prediction 1510 1537 - -
Cpe01g01856 1969 MobiDBLite consensus disorder prediction 1777 1872 - -
Cpe01g01856 1969 MobiDBLite consensus disorder prediction 1885 1915 - -
Cpe01g01856 1969 MobiDBLite consensus disorder prediction 1431 1457 - -
Cpe01g01856 1969 MobiDBLite consensus disorder prediction 1947 1969 - -
Cpe01g01856 1969 Pfam Transcription factor/nuclear export subunit protein 2 1003 1297 IPR021418 -
Cpe01g01856 1969 MobiDBLite consensus disorder prediction 1338 1365 - -
Cpe01g01856 1969 MobiDBLite consensus disorder prediction 1338 1872 - -
Cpe01g01856 1969 MobiDBLite consensus disorder prediction 1602 1758 - -
Cpe01g01856 1969 Pfam Transcription- and export-related complex subunit 709 784 IPR021726 -
Cpe01g01856 1969 Coils Coil 1817 1837 - -
Cpe01g01856 1969 MobiDBLite consensus disorder prediction 1401 1422 - -
Cpe01g01856 1969 PANTHER THO2 PROTEIN 13 1876 IPR040007 GO:0000347|GO:0006397|GO:0006406
Cpe01g01856 1969 MobiDBLite consensus disorder prediction 1366 1387 - -
Cpe01g01856 1969 Pfam THO complex subunit 2 N-terminus 544 707 IPR032302 -
Cpe01g01856 1969 Pfam THO complex subunit 2 N-terminus 220 528 IPR032302 -
Cpe01g01856 1969 Coils Coil 1054 1095 - -
Cpe01g01856 1969 PANTHER THO COMPLEX SUBUNIT 2 13 1876 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01856 K12879 THOC2; THO complex subunit 2 - csv:101221461 3027.27
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01856 Cpe13g00426 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01856 Cpe-Chr1:15804509 Cpe13g00426 Cpe-Chr13:4572387 7.78E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g529 . Blo16g00765 . Bda11g00196 Bpe13g00998 . . . . . . . . . . . Cpe01g01856 . . . . . . . . . . . . . . . . . . . Csa05g01969 . . . . . Bda11g00196 . . . Bma06g01140 . Cmo04g02231 Cmo15g00928 Cma04g02138 Cma15g00890 Car04g02075 Car15g00836 Cpe13g00426 . Bhi12g00962 . . . . . Lcy10g1597 Cla01g00652 Cam01g0681 Cec01g0674 Cco01g0701 Clacu01g0669 Cmu01g0642 Cre09g1863 Lsi09g00705 . Chy09g00805 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005299 1 1 2 1 1 1 2 1 1 1 1 1 3 1 1 3 1 2 2 1 2 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01856 Cpe_Chr01 FPKM 0.0 0.0 0.0 0.0 1.035783 1.038369 2.44365 2.93048 2.424216 3.512744