Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01857 ATGCCGGCTTTTCTTGACGAAGATTGCAAAAAAAAAAAAAAAATGAGGGAACCCCATTCGGGTTTTGGGGTGTTCCTTTTTGTGTTCGTGTTCTGTATCCTGTTTCTGGGTTCCTCTGTTTACGGCCAGCCGGCTGCCGGCGGTGGTGGTGATGGGTCAGTGATGAATCTCTTGAGGACTAGTATTGGAGCCCCGAGTTCTCTTGGGTGGACTGGTTCGGATTACTGTCAATGGCAGTATGTGAATTGCGATTCTCAGAATCGAGTGCTGAAAATCCAAATTGGAAACCAAAAACTCAAGGGATCACTTCCAAAGGAGCTCTTCAACCTCTCGGCGTTAGTACAATTAGAGGTGCAGGGCAACCAGCTGAGTGGGCCGTTTCCTAATCTTCCTGATTCACTGCAAATACTTCTTGCGCATGATAATCTTTTCACTTCCATGCCGGCTGATTTCTTCGCCAATAAGTCGGCGCTGCAATCGATATACATCGACAACAATCCCTTCGCGGCCTGGACAATCCCTGATAACATTCGAGAGTCTTCTGGGCTACAGGAATTTTCAGCAAATAGCGCTAATATAACTGGTGTAATCCCTGGATTTTTCGATGGCACTACATTTCCGACTCTTACAAGCTTGCATTTGGCGGGTAATTTTCTTGAAGGTGGATTACCAGCGAGCTTTGCGAGTTCTTCCATTCAGTCACTTTGGTTAAATGGACAACAGAGTAGTTCTAAGTTAAACGGTTCCATTGCCGTACTGCAAAACATGACAAATTTACTGGAGATTTGGTTGAATATGAACCAATTTTCAGGTCCTTTGCCGGATTTCTCAAACCTTCAGGGATTACAGAACTTGAGTTTGAGGGATAATCAGCTTACGGGTATTGTTCCTTCATCCTTGATAAATTTGAAATCCCTTGTGATTGTGAATTTGACGAATAATATGCTTCAAGGACCCATCCCTGCATTTAATCCTAATGTTCATCTGGACATGAGTCCTGGATCCAACAATTTTTGCTCGAATTCTCCGGGTGAACCTTGTAATCCCCTTGTGACTGCTTTGTTATCGGTTGCACAGTCAATGGGTTTTCCAACAGCATTTGCACAGGGCTGGGTAGGCAATGATCCTTGTAATAATTTCAAGGGCGTTATGTGTACTGGCAACCCTGGAAACATAACTGTTATTAACTTTAGAAATATGGACCTTGTGGGCACTATTTCGCCTAGCTTTTCATTGCTTACATCTGTGCAAAAGCTGCTTCTCTCTAATAATTCTCTTTCTGGCACAATACCAACAGAGCTTGTTACTATGCCTAATCTTACAGAATTAGATGTCTCCAATAATAAGCTTTATGGTAAAGTGCCTGGTTTTAGGACAAATGTGATTGTGAACACGCAGGGGAACCCAGATATTGGGAAGGATAGCCCCAGTGCTCCTACTGGGAAATCACCCTCTGGTACCGGTTCGGGTGAGGTATCTGATAAAGTTCATAAGAGAAGTAATACCGGGGTGGTTGTTGGTTCCATAGTTGGTGTTCTTGTTGTTCTACTAATAGTTGGGACTGTGATTTTCTTTTACATGAGAAATAAGAGACATGGTAGTAGAGTGCCGAGTCCAAATACAGTGGTGGTACATCCTAGTCATTCTGGAGACCAAAATTCAGTGAAGATTACACTTACGCAGGCTAGAGTCGATGCGCCTGAAACCAGCAGCCCTCCTGCTGGACCTACCAGGGGTGTTGAGTATTTGCATAGTTTAGCACATCAAAGCTTTATCCATCGTGATCTTAAACCATCGAACATTCTTCTCGGAGATGATTTGCGGGCTAAAGTAGCTGACTTTGGATTGGTTCGTCTTGCTCCTGAAGGGAAAGCGTCGGTCGAAACAAGACTTGCAGGAACATTTGGTTATCTTGCCCCAGAATATGCAGACCCTTCAATCGACATAGACGAGGAGACCCTTGGCAGCATCACCACTGTTGCAGACTTGGCTGGTCATTGCTGTGCAAGGGAGCCATTCCAGCGGCCCGACATGAGTCATGTAGTCAACGTGCTTTCGTCTCTAGTTGATGTCTGGAAGCCAACAGAACCATCATCTGAAGAGCAGTTTGCAATTGATTTGGAGATGTCATTGCCACAGGCGCTTAAGAAATGGCAGGCATTCGAAGGAGATAGCGGTACGGATATGTCTTCATCATCATTCCTTCCAAGTAGAGACAACACACAAACCAGCATCCCGAACCGCCCATCTGGTTTTGTAACTTCGTTTACGTCTGCCGATGCA 2283 44.72 MPAFLDEDCKKKKKMREPHSGFGVFLFVFVFCILFLGSSVYGQPAAGGGGDGSVMNLLRTSIGAPSSLGWTGSDYCQWQYVNCDSQNRVLKIQIGNQKLKGSLPKELFNLSALVQLEVQGNQLSGPFPNLPDSLQILLAHDNLFTSMPADFFANKSALQSIYIDNNPFAAWTIPDNIRESSGLQEFSANSANITGVIPGFFDGTTFPTLTSLHLAGNFLEGGLPASFASSSIQSLWLNGQQSSSKLNGSIAVLQNMTNLLEIWLNMNQFSGPLPDFSNLQGLQNLSLRDNQLTGIVPSSLINLKSLVIVNLTNNMLQGPIPAFNPNVHLDMSPGSNNFCSNSPGEPCNPLVTALLSVAQSMGFPTAFAQGWVGNDPCNNFKGVMCTGNPGNITVINFRNMDLVGTISPSFSLLTSVQKLLLSNNSLSGTIPTELVTMPNLTELDVSNNKLYGKVPGFRTNVIVNTQGNPDIGKDSPSAPTGKSPSGTGSGEVSDKVHKRSNTGVVVGSIVGVLVVLLIVGTVIFFYMRNKRHGSRVPSPNTVVVHPSHSGDQNSVKITLTQARVDAPETSSPPAGPTRGVEYLHSLAHQSFIHRDLKPSNILLGDDLRAKVADFGLVRLAPEGKASVETRLAGTFGYLAPEYADPSIDIDEETLGSITTVADLAGHCCAREPFQRPDMSHVVNVLSSLVDVWKPTEPSSEEQFAIDLEMSLPQALKKWQAFEGDSGTDMSSSSFLPSRDNTQTSIPNRPSGFVTSFTSADA 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15842895 15846051 - Cp4.1LG01g18570.1 Cpe01g01857 463170

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01857 761 ProSiteProfiles Protein kinase domain profile. 440 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g01857 761 SUPERFAMILY L domain-like 54 339 - -
Cpe01g01857 761 SUPERFAMILY L domain-like 351 457 - -
Cpe01g01857 761 MobiDBLite consensus disorder prediction 724 761 - -
Cpe01g01857 761 PANTHER OSJNBA0070M12.3 PROTEIN 644 761 - -
Cpe01g01857 761 PANTHER OSJNBA0070M12.3 PROTEIN 577 643 - -
Cpe01g01857 761 PANTHER OSJNBA0070M12.3 PROTEIN 40 570 - -
Cpe01g01857 761 Pfam Leucine Rich repeats (2 copies) 414 454 IPR025875 -
Cpe01g01857 761 PANTHER RECEPTOR PROTEIN KINASE TMK1 644 761 - -
Cpe01g01857 761 PANTHER RECEPTOR PROTEIN KINASE TMK1 577 643 - -
Cpe01g01857 761 PANTHER RECEPTOR PROTEIN KINASE TMK1 40 570 - -
Cpe01g01857 761 ProSitePatterns Serine/Threonine protein kinases active-site signature. 591 603 IPR008271 GO:0004672|GO:0006468
Cpe01g01857 761 MobiDBLite consensus disorder prediction 465 495 - -
Cpe01g01857 761 MobiDBLite consensus disorder prediction 465 490 - -
Cpe01g01857 761 Gene3D Transferase(Phosphotransferase) domain 1 574 718 - -
Cpe01g01857 761 Gene3D Ribonuclease Inhibitor 51 346 IPR032675 -
Cpe01g01857 761 Pfam Leucine rich repeat N-terminal domain 352 385 IPR013210 -
Cpe01g01857 761 Pfam Leucine rich repeat N-terminal domain 54 84 IPR013210 -
Cpe01g01857 761 SUPERFAMILY Protein kinase-like (PK-like) 577 685 IPR011009 -
Cpe01g01857 761 SMART serkin_6 488 720 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g01857 761 Gene3D Ribonuclease Inhibitor 350 475 IPR032675 -
Cpe01g01857 761 MobiDBLite consensus disorder prediction 723 761 - -
Cpe01g01857 761 Pfam Protein kinase domain 578 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01857 - - K00924 csv:101210025 824.313
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01857 Cpe13g00428 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01857 Cpe-Chr1:15842895 Cpe01g01980 Cpe-Chr1:16922870 0 dispersed
Cpe01g01857 Cpe-Chr1:15842895 Cpe13g00428 Cpe-Chr13:4612613 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g532 . . Bda01g01787 Bda11g00197 Bpe13g00997 . . . . Cmo18g00627 . . . . . . Cpe01g01857 . . . . . . . . . . . . . . . . . . . Csa05g01967 . . . . . Bda11g00197 . Bpe02g01964 Bma01g00495 Bma06g01141 . Cmo04g02234 Cmo15g00927 Cma04g02141 Cma15g00889 Car04g02076 Car15g00835 Cpe13g00428 . Bhi12g00963 . . . . . Lcy10g1596 Cla01g00653 . . . . . . Lsi09g00707 . Chy09g00467 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001831 2 2 1 2 3 1 4 1 1 2 2 1 4 2 1 4 1 1 4 1 2 2 2 2 2 2 2 3 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62165 PF00069 Pkinase 2.00E-14 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01857 Cpe_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.442899 0.0