Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01858 ATGGGTTCGAAAATGCAGCCAAACCACAACTCTGTGGCCAAGTGGAATGAGCAAATGGGAACAACAAAGAAGGGTTACACATTTGTTCAAGCTAACAGGGCTTGGCTTCGTAAGTATCTTCTGCTGTGGATTATGGGGATGGCATTTATGAGCATGTTAATCTATAATGGCATGGATGCTGATAATAAAGTGAGAAGGAATGAAGTGTTGGGGAGCATGTGTGAAGAGAGGGCAAGGATGTTGCAAGATCAGTTCAGTGTTAGCGTCAACCATGTTCATGCCTTGGCTGTGCTTGTTTCCACCTTTCATTACTTCAAGACCCCTTCTGCAATTGATCAGGAGACTTTTGCAGAATACACAGCCAGAACAGCTTTCGAACGGCCTCTACTCAGTGGGGTGGCGTATGCACAGAGAGTGGTTCATTCAGAGAGGGATATATTCGAAAAGCAACATGGGTGGATGATAAAAACAATGAAAAGAGAACCTTCCCCAATTCGAGATGAATATGCACCAGTTATATTTTCTCAAGAAACAGTCTCTTATATTGAATCACTGGATATGATGTCAGGAGAGGTAGAGCAAAATGAGCTTGCTATTCAAGCTTATATGTTGGATGAAAGTGGCATGCCTATCTGTATTGTTTTTCCTCTCTCATTTGGTAGATTTCTTCTGGCTGATATGATGCAGGAGGACCGCGAAAATATTTTGAGGGCTAGAGCAACAGGAAAAGCTGTCTTAACAAGCCCCTTCAGGCTGCTGGGCTCACATCATCTTGGAGTTGTTTTGACGTTTCCCGTTTACAAATCCAAATTTCCATCTATACCAACTGAAGAAGAACGTATAGAAGCAACAGCAGGCTACGTTGGTGGAGCTTTTGATGTCGAGTCACTTGTGGAGAACTTGCTTGGGCAGCTTGCAGGGAATCAGGCCATTTTGGTAAACGTATATGATGTTACGAACTCTTCTGACCCCCTCGTCATGTACGGTCATCAATATCAAGATGGTGATAAGTTTCTTTTGCATGGGAGTAGCCTTGATTTCGGAGATCCATTCAGGAAGCATCTGATGATTTGTAGATATCAGCAGAAGGCTCCCACATCCTGGACTGCCCTGACTACTGCATTCTTATTCTTCGTTATCGGGTTATTAGTTGGATATATTTTATACGGTGCAGCAACTCACATCGTGAAGGTTGAAGATGATTTTCATGAGATGCAGGAACTGAAAGTTCGAGCTGAGGCTGCTGATGTTGCAAAATCCCAGTTTCTTGCAACTGTTTCTCATGAAATTAGAACACCAATGAATGGCATTCTTGGAATGCTTGCTCTGCTTCTGGACACGGATTTAAGTTCAACTCAGAAGGATTATGCTCAGACTGCTCAAGCTTGTGGAAGGGCACTGATAGCATTAATAAATGAGGTTCTTGATCGGGCAAAAATTGAAGCTGGAAAATTAGAACTGGAAGCAGTTCCATTTGACATTCGATCAATACTTGATGATGTCCTGTCTTTATTTTCCGAGAAGTCCAGACAAAAGGGTCTGGAGCTGGCAGTTTTTGTATCTGATAAAGTTCCAGAAATTGTAATTGGAGACCCAGGAAGATTCAGACAAATCATAACAAATCTTGTGGGTAACTCTGTTAAGTTTACTCAAAGGGGACACATATTTGTTAAAGTACATCTAGCTGATCACTCAAAAGGCTCCATCGACACAAAATATGTCAATGGAATGTCAGATAGTGACTTGTTTATATCGGATGGTCGTGAATTTCAAACTTTAAGTGGACGTGAGGCAGCTGATAATCAGAACAATTTGGATAACTTTAAACATCAAATTGCTGATGAGAACTCTCAGTCGAATGCTTCTCCAAACAACCCAGCAGTAACTAATGAGTATTGTGGTCATGTCACATTGATGGTAAGTGTGGAGGATACTGGAATTGGGATCCTTTTACATGCCCAAAATCGAGTTTTCATGCCCTTCATGCAAGCAGATAGCTCGACCTCTCGAAATTACGGAGGAACTGGCATCGGCTTGAGTATCAGCAAATGTTTAGTTGAACTAATGGGTGGTCAGATCAACTTCGTAAGTCAGCCTCAGATTGGTAGCACGTTTTCGTTCACTGCTGTTTTAGGAAAGTGCAAGAAAAATTCAATGAATGACATGAAAAAACCCAGCTCTGAAGAACTTCCTCCCAGTTTTAGGGGAATGAAAGCAATAATAGTTGACAGGAAACCAGTTAGAGCTTCTGTAACCAGATATCATTTGAAGAGACTTGGTATCATTGTTGAAGTCACCAGTAGTATCAACATGGCAGCTTCTTTATGCAAAGAAAATGGCTCCATAGCACCAGGAAGCACACTCCTTCCAGATATGATCTTAGTTGAAAAAGACACATTGAAGTCTGATGAGGAATGTGGTATCATTCATCAACTGAACTGGAAACTGAATGCGAGTTCGTTTAAGTTACCGAAACTGATACTTCTTGCTACAAACATCACCACTGCAGAACTAGACAAGGCAAGGGCAGCTGGTTTTGCAGACACTGTGATCATGAAGCCATTGAGGGCGAGTATGGTTGCTGCCTGTCTTCAACAAGTACTTGATGTTAAGAACCAGAGGCGAGGAAGGGGCCTACCAAATGATTCTGTTTTCCTTCAGAGCCTTCTCTGTGGCAAGAGAATCTTAGTTGTTGATGACAATAAAGTAAACCGAAGGGTCGCTGCAGGCGCTCTGAAGAAAGTAGGTGCAGATGTTGAGTGTGCAGAAAGCGGGAAAGCTGCACTGAAGTTGCTTGAGCTACCGCACAATTTTGATGCTTGCTTCATGGATATTCAAATGCCTGAAATGGATGGGTTTGAGGCGACTCGTCTCATCAGGATGATGGAGAGCAAGGCAAACGAAGGATCATCTACAACCGAAAGCGAGTGGCATGTACCAATATTAGCAATGACTGCAGACGTGATTCATGCTACCTATGACGAGTGCCTGAAATACGGAATGGATGGCTACGTCTCGAAACCCTTTGAGGAAGAAAATCTATACAAGGAAGTTGCCAAGATTTTCCAAAAATCATAG 3078 42.4 MGSKMQPNHNSVAKWNEQMGTTKKGYTFVQANRAWLRKYLLLWIMGMAFMSMLIYNGMDADNKVRRNEVLGSMCEERARMLQDQFSVSVNHVHALAVLVSTFHYFKTPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVHSERDIFEKQHGWMIKTMKREPSPIRDEYAPVIFSQETVSYIESLDMMSGEVEQNELAIQAYMLDESGMPICIVFPLSFGRFLLADMMQEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKFPSIPTEEERIEATAGYVGGAFDVESLVENLLGQLAGNQAILVNVYDVTNSSDPLVMYGHQYQDGDKFLLHGSSLDFGDPFRKHLMICRYQQKAPTSWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQKDYAQTAQACGRALIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRQKGLELAVFVSDKVPEIVIGDPGRFRQIITNLVGNSVKFTQRGHIFVKVHLADHSKGSIDTKYVNGMSDSDLFISDGREFQTLSGREAADNQNNLDNFKHQIADENSQSNASPNNPAVTNEYCGHVTLMVSVEDTGIGILLHAQNRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFVSQPQIGSTFSFTAVLGKCKKNSMNDMKKPSSEELPPSFRGMKAIIVDRKPVRASVTRYHLKRLGIIVEVTSSINMAASLCKENGSIAPGSTLLPDMILVEKDTLKSDEECGIIHQLNWKLNASSFKLPKLILLATNITTAELDKARAAGFADTVIMKPLRASMVAACLQQVLDVKNQRRGRGLPNDSVFLQSLLCGKRILVVDDNKVNRRVAAGALKKVGADVECAESGKAALKLLELPHNFDACFMDIQMPEMDGFEATRLIRMMESKANEGSSTTESEWHVPILAMTADVIHATYDECLKYGMDGYVSKPFEEENLYKEVAKIFQKS 1025
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15849312 15857529 - Cp4.1LG01g18560.1 Cpe01g01858 463171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01858 1025 Pfam Response regulator receiver domain 895 1018 IPR001789 GO:0000160
Cpe01g01858 1025 Gene3D - 888 1025 - -
Cpe01g01858 1025 PANTHER HISTIDINE KINASE 4 225 1024 - -
Cpe01g01858 1025 SUPERFAMILY CheY-like 733 870 IPR011006 -
Cpe01g01858 1025 CDD PDC1_HK_sensor 186 294 - -
Cpe01g01858 1025 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 404 484 IPR036097 GO:0000155|GO:0007165
Cpe01g01858 1025 Coils Coil 468 488 - -
Cpe01g01858 1025 Pfam CHASE domain 209 328 IPR006189 -
Cpe01g01858 1025 Pfam CHASE domain 110 195 IPR006189 -
Cpe01g01858 1025 SMART CHASE_2 107 330 IPR006189 -
Cpe01g01858 1025 SMART HKATPase_4 530 713 IPR003594 -
Cpe01g01858 1025 Pfam His Kinase A (phospho-acceptor) domain 418 483 IPR003661 GO:0000155|GO:0007165
Cpe01g01858 1025 SUPERFAMILY CheY-like 892 1022 IPR011006 -
Cpe01g01858 1025 ProSiteProfiles CHASE domain profile. 107 357 IPR006189 -
Cpe01g01858 1025 CDD HisKA 418 479 IPR003661 GO:0000155|GO:0007165
Cpe01g01858 1025 SMART REC_2 893 1018 IPR001789 GO:0000160
Cpe01g01858 1025 CDD REC_hyHK_CKI1_RcsC-like 895 1018 - -
Cpe01g01858 1025 ProSiteProfiles Response regulatory domain profile. 894 1022 IPR001789 GO:0000160
Cpe01g01858 1025 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 530 711 IPR003594 -
Cpe01g01858 1025 Gene3D CHASE domain 111 364 IPR042240 -
Cpe01g01858 1025 PANTHER HISTIDINE KINASE 4 21 196 - -
Cpe01g01858 1025 Gene3D - 391 481 - -
Cpe01g01858 1025 SMART HisKA_10 418 483 IPR003661 GO:0000155|GO:0007165
Cpe01g01858 1025 PANTHER TWO-COMPONENT HISTIDINE KINASE 225 1024 - -
Cpe01g01858 1025 PRINTS Bacterial sensor protein C-terminal signature 697 710 IPR004358 GO:0016310|GO:0016772
Cpe01g01858 1025 PRINTS Bacterial sensor protein C-terminal signature 638 652 IPR004358 GO:0016310|GO:0016772
Cpe01g01858 1025 PRINTS Bacterial sensor protein C-terminal signature 673 691 IPR004358 GO:0016310|GO:0016772
Cpe01g01858 1025 PRINTS Bacterial sensor protein C-terminal signature 656 666 IPR004358 GO:0016310|GO:0016772
Cpe01g01858 1025 ProSiteProfiles Response regulatory domain profile. 738 868 IPR001789 GO:0000160
Cpe01g01858 1025 Coils Coil 598 618 - -
Cpe01g01858 1025 PANTHER TWO-COMPONENT HISTIDINE KINASE 21 196 - -
Cpe01g01858 1025 Gene3D - 482 716 IPR036890 -
Cpe01g01858 1025 CDD HATPase_EvgS-ArcB-TorS-like 535 711 - -
Cpe01g01858 1025 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 472 708 IPR036890 -
Cpe01g01858 1025 Gene3D - 58 110 - -
Cpe01g01858 1025 ProSiteProfiles Histidine kinase domain profile. 425 713 IPR005467 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g01858 Cpe13g00429 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01858 Cpe-Chr1:15849312 Cpe16g00390 Cpe-Chr16:5476764 0 dispersed
Cpe17g00771 Cpe-Chr17:6069294 Cpe01g01858 Cpe-Chr1:15849312 4.05E-25 dispersed
Cpe01g00013 Cpe-Chr1:77826 Cpe01g01858 Cpe-Chr1:15849312 0 transposed
Cpe01g01858 Cpe-Chr1:15849312 Cpe13g00429 Cpe-Chr13:4620451 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48897 PF02518 HATPase_c 6.60E-31 CL0025 Cpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01858 K14489 - csv:101209777 1740.7