Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01859 ATGGACACTGTGAACAGGCCAGGTTTCAGGCATACTGCCTCTGCCATTGCAGCCCTTGCACATATTTTTGGTCTCACTGCCTGCATTCTTACGCTCGTTTGGCTCCTGCATTATCGAGGCGGCCTCGCCTACGATTCTCGGAGCGCCGACCTCGTTTTCAATTGCCACCCGTTCTTCATGCTCCTTGGTTTCGTGATCGTGTCGGGGGAAGCAATTATGGCTTACAAGACAGTGAGGGCAGACAAAATGACAACGAAGATAGTTCATATGGCGTTGCATTTTGTAGCCATTTGTATGGGAATTGTAGGCATAAATGCTGCTTTCAAGTTCCATGATATGATCAAATTGGAGCATATGTTTAGTTTGCATTCATGGATTGGCATTGTCACTTTCTGCCTCTATGGCTTACAG 411 46.96 MDTVNRPGFRHTASAIAALAHIFGLTACILTLVWLLHYRGGLAYDSRSADLVFNCHPFFMLLGFVIVSGEAIMAYKTVRADKMTTKIVHMALHFVAICMGIVGINAAFKFHDMIKLEHMFSLHSWIGIVTFCLYGLQ 137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15921380 15921927 - Cp4.1LG01g18650.1 Cpe01g01859 463172

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01859 137 PANTHER TRANSMEMBRANE ASCORBATE FERRIREDUCTASE 3-RELATED 4 137 - -
Cpe01g01859 137 Gene3D - 10 137 - -
Cpe01g01859 137 ProSiteProfiles Cytochrome b561 domain profile. 19 137 IPR006593 -
Cpe01g01859 137 SMART 561_7 55 137 IPR006593 -
Cpe01g01859 137 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Cpe01g01859 137 PANTHER CYTOCHROME B561-RELATED 4 137 IPR043205 GO:0016491
Cpe01g01859 137 Pfam Eukaryotic cytochrome b561 56 137 IPR006593 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01859 K08360 CYB561; transmembrane ascorbate-dependent reductase [EC:7.2.1.3] - csv:101208884 236.113
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01859 Cpe-Chr1:15921380 Cpe15g00317 Cpe-Chr15:4141089 2.73E-39 dispersed
Cpe01g00032 Cpe-Chr1:225531 Cpe01g01859 Cpe-Chr1:15921380 3.20E-27 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g539 . . . Bda11g00198 . . . . . . . . . . . . Cpe01g01859 . . . . . . . . . . . . . . Cone13ag0724 . Cone6ag0339 Cone9ag0373 . Csa05g01961 . . . . . Bda11g00198 . . . . . Cmo04g02239 . Cma04g02147 . Car04g02080 . . . Bhi12g00971 . . . . . Lcy10g1591 Cla01g00658 Cam01g0688 Cec01g0680 Cco01g0708 Clacu01g0677 Cmu01g0651 Cre09g1856 Lsi09g00711 . . Cme09g01298
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012715 1 1 1 0 0 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01859 Cpe_Chr01 FPKM 0.901754 0.0 0.229459 0.0 2.824726 5.580186 2.634466 0.0 0.0 0.0