Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01865 ATGTTGAAACTTTCTTCTTCTTCTGCAGCTGCTACAGCTTCTTCTTCTGGTGGTTCTCCACCTCCTCCACCCAATTCTGACCATGGGGTCACCAGTAAAAGAAAGAGAAGACCAGCAGGAACCCCAGATCCAGATGCTGAAGTGGTTTCCTTATCGCCAAAAACCCTTTTGGAATCGGATCGGTATGTTTGTGAAATATGCAACCAAGGGTTCCAAAGGGATCAGAATCTTCAAATGCACCGCCGCCGCCACAAGGTGCCGTGGAAGCTACTCAAGAGAGCGGAGACGGCGGAGGCAGTCAAGAAAAAGGTGTTCGTTTGTCCTGAACCCACTTGTCTCCACCATGACCCTCGCCATGCCCTTGGTGACCTCGTCGGTATCAAAAAACACTTCCGGAGAAAGCATAGCAATCAAAAGCATTGGGTTTGTGACAAATGCTCTAAGGCTTATGCTGTTCATTCTGATTTCAAAGCTCATCTCAAAACTTGTGGCACTCGTGGCCACTCTTGTGATTGTGGCCTGGAGAGCTTCATAGAACATCAAGATGCTTGTAATCTCCGGCAGCTGAGGTCCGATGCACCGCCGCCGTTGCTACCACCGCCATTACTACAACCCTACTCACGATCGATTTCTTACACCGGCGCCTCGACCAGCACCGATCATAGCTTTCAAATGGCTACACCATTACGAGGGTTTCCAATTTTATCATCGAACTTAGATCGAAACATCAACATTAATTTCCCGAATCACCATGATCTCGAGCTTCATCTTTCATCTCCAAGCTCGGCGTTTCTTAAACTCTCAATTGGGTCAAACAAGGAGGCGAAGGAAGAGCGTCAGCTCGATTTGGCGATCGCCGAGAAAGCTTACGCAGAAGAAGCACGACGAGAGGCGAAACGACAGATCGAGATCGCCGAGGTCGAGTTCGCAAATGCGAAAATGATACGACAACAAGCTCAAGCAGAGTTGGAAAAAGCTAGGATCTTGAAGGAAGAAGCCACAAGGAAAATGAGCTCCACCATTATGGAAATCACTTGCCAAACTTGTCGGCTACACTTCCATATGAGCTCCGTTACACCGGAGGAGACCTCATTGGCCATTAGCTACATGTCATCCGCTACAACAGAAGGTGATGGAGAGTGA 1143 48.47 MLKLSSSSAAATASSSGGSPPPPPNSDHGVTSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRAETAEAVKKKVFVCPEPTCLHHDPRHALGDLVGIKKHFRRKHSNQKHWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGLESFIEHQDACNLRQLRSDAPPPLLPPPLLQPYSRSISYTGASTSTDHSFQMATPLRGFPILSSNLDRNININFPNHHDLELHLSSPSSAFLKLSIGSNKEAKEERQLDLAIAEKAYAEEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEATRKMSSTIMEITCQTCRLHFHMSSVTPEETSLAISYMSSATTEGDGE 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15978666 15980953 + Cp4.1LG01g18590.1 Cpe01g01865 463178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01865 380 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 5 264 - -
Cpe01g01865 380 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Cpe01g01865 380 MobiDBLite consensus disorder prediction 1 52 - -
Cpe01g01865 380 PANTHER OS03G0310200 PROTEIN 273 380 IPR039288 GO:0009630
Cpe01g01865 380 SUPERFAMILY beta-beta-alpha zinc fingers 61 161 IPR036236 -
Cpe01g01865 380 PANTHER OS03G0310200 PROTEIN 5 264 IPR039288 GO:0009630
Cpe01g01865 380 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Cpe01g01865 380 MobiDBLite consensus disorder prediction 1 16 - -
Cpe01g01865 380 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 273 380 - -
Cpe01g01865 380 Gene3D Classic Zinc Finger 49 137 - -
Cpe01g01865 380 SMART c2h2final6 105 135 IPR013087 -
Cpe01g01865 380 SMART c2h2final6 62 84 IPR013087 -
Cpe01g01865 380 SMART c2h2final6 141 168 IPR013087 -
Cpe01g01865 380 Coils Coil 281 336 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g01865 Cpe13g00436 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01865 Cpe-Chr1:15978666 Cpe02g01099 Cpe-Chr2:10053745 4.82E-136 dispersed
Cpe04g01616 Cpe-Chr4:12553022 Cpe01g01865 Cpe-Chr1:15978666 1.61E-16 dispersed
Cpe18g00905 Cpe-Chr18:8115128 Cpe01g01865 Cpe-Chr1:15978666 4.96E-18 dispersed
Cpe01g01865 Cpe-Chr1:15978666 Cpe13g00436 Cpe-Chr13:4697519 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48899 None None None None Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01865 K25871 - csv:101210468 607.06