Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01872 ATGGTGCTTCCCAAGACTTTCTCTGAATCGGACGTCTCTGTCCATTCCACCTTTGCCTCTCGCTATGTGCGGGACTCTGCTCCAAGATTCACCATGCCCCAAAACTCCATGCCCAAGGAGGCTGCTTTCCAAATCATCAACGACGAGCTCATGCTCGATGGCAACCCCAGGCTCAATTTGGCTTCCTTCGTCACCACTTGGATGGAGCCCGAGTGCGATAAGCTGATTATGGACTCTGTCAACAAGAACTACGTCGATATGGACGAGTACCCTGTCACCACCGAGCTTCAGAACCGATGTGTCAATATGATTGCCCATCTCTTCAACGCTCCCTTGGGAGACTCCGACACGGCGGTTGGAGTTGGCACGGTGGGATCCTCGGAGGCCATCATGTTGGCGGGATTGGCCTTCAAGAGGAAGTGGCAGAACAAGCGGAAAGCAGAGGGGAAGCCTTATGATAAGCCGAATATCGTGACAGGGGCGAATGTTCAAGTTTGTTGGGAGAAATTCGCGAGGTACTTTGAAGTGGAGCTGAAGGAAGTGAAGGTGAGAGAAGGGTATTACGTGATGGACCCTGTCAAGGCGGTGGAGATGGTGGATGAGAACACCATCTGCGTCGCTGCCATTTTGGGGTCGACTTACAATGGGGAATTCGAAGATGTGAAGCTGTTGAATGATTTGTTGGTGGAGAAGAACAAGAAAACAGGGTGGGATACTCCCATTCATGTGGATGCTGCCAGCGGTGGATTCATAGCGCCGTTTCTGTATCCAGACCTCGAATGGGACTTCCGGCTTCCATTGGTGAAGAGCATCAATGTGAGTGGGCACAAATATGGGCTTGTCTACGCCGGAATTGGATGGGTCATTTGGAGAACCAAAGAGGATTTGCCTGAAGAGCTGATTTTCCACATAAATTACCTCGGAGCGGATCAACCCACCTTCACTCTCAACTTCTCCAAAGGGTCAAGCCAAATCATCGCTCAGTATTACCAACTAATCCGCTTGGGTTTCGAGGGGTACCAGAACGTGATGCAGAATTGTCACGACAACGCAATGGTGCTGAAGGAAGGGCTTGAAAAAACAGGAAGGTTCAGCATAGCGTCGAAGGACATGGGGGTGCCAGTGGTGGCATTCTCTCTGAAAGACAGAAGCCGGCACGACGAATTCGAGGTGTCGGAAATGCTGCGACGGTTCGGGTGGATCGTACCGGCATACCCAATGCCAGAGGGGGCGAAGCATGTGTCGGTTCTTCGCGTGGTGATCAGAGAAGACTTCTCGCGCACGCTAGCAGAGCGGCTGGTGCTTGATATCGTGAAAGTGTTGGCGGAGCTTGATACTCTGCCACCCAAGAATGGTGCAAAATCGAGAAGCTTGGAAGATGGGAACAAGGAGAAGGCAGAGGAAGCAGGGAGGGAGATAGCGAGTTATTGGAGGAATATAACCATGGCTAGGAAGATGAAGCTTGCTGAGACTCAAGCTGGTCCTTCAGTAACAGTCATTGCCAAATAA 1509 51.36 MVLPKTFSESDVSVHSTFASRYVRDSAPRFTMPQNSMPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMDSVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSDTAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKVREGYYVMDPVKAVEMVDENTICVAAILGSTYNGEFEDVKLLNDLLVEKNKKTGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKEDLPEELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGFEGYQNVMQNCHDNAMVLKEGLEKTGRFSIASKDMGVPVVAFSLKDRSRHDEFEVSEMLRRFGWIVPAYPMPEGAKHVSVLRVVIREDFSRTLAERLVLDIVKVLAELDTLPPKNGAKSRSLEDGNKEKAEEAGREIASYWRNITMARKMKLAETQAGPSVTVIAK 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16069850 16071534 + Cp4.1LG01g18680.1 Cpe01g01872 463185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01872 502 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Cpe01g01872 502 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Cpe01g01872 502 CDD DOPA_deC_like 59 439 - -
Cpe01g01872 502 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cpe01g01872 502 Gene3D - 66 360 IPR015421 GO:0003824
Cpe01g01872 502 Gene3D - 1 65 - -
Cpe01g01872 502 Gene3D - 361 448 - -
Cpe01g01872 502 PANTHER GLUTAMATE DECARBOXYLASE 1 487 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cpe01g01872 502 PANTHER GLUTAMATE DECARBOXYLASE 1 487 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g01872 Cpe13g00440 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01872 Cpe-Chr1:16069850 Cpe13g00539 Cpe-Chr13:5469153 0 dispersed
Cpe01g01871 Cpe-Chr1:16063845 Cpe01g01872 Cpe-Chr1:16069850 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01872 K01580 - csv:101208026 955.281