Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01885 ATGATGCTCCCAATTCTGTTCCTGTTTTGCTGTTTCTCTGCAACAACTGGGTTTGGTTCTGAACGGCTTATAAATCCCAAGAAGCTGCCTATGTTCGTCGACGACTTGCCGGAAATCCCCACACTCTCCGGCTTCCATGGCCGCCATTCCAAGCACCTCCGCCTTGGCATGTTCCTCAAGACATGGGTCTGTNTCATAAATCCCAAGAAGCTGCCTATGTTCGTCGACGACTTGCCGGAAATCCCCACACTCTCCGGCTTCCATGGCCGCCATTCCAAGCACCTCCGCCTTGGCATGTTCCTCAAGACATGGAAATTTCACCGAGATCTTCCCCCGACTCCTGTTTTTGCTTACGGTGTTTCCAAGGACTCTGCAACAGTTCCTGGCCCTACAATCGAAGCCATCCATGGCATCTCCACGTATGTGACGTGGGAAAATCACCTCCCTGACCGGCATATTCTTCCATGGGACCCCACAATTCCGACTGCCATCCCTGCCGGGAATCGTGGCATCCCGACGGTGGTTCATCTCCATGGCGGCATCACCGAGCCTGGCAGCGATGGGCATGCAACCTCATGGTTCACTAATGGCTTCAAGCAGAAAGGACCCTCATGGACCAACAAGACATATCACTATAACAATCACCAGCACCCTGGTAATCTTTGGTACCATGATCATGCCATGGGGTTGACTAGAGTCAACCTTCTTGCTGGCCTGATTGGATCCTATATAATCCGTCACCCCCATGTCGAGGCTCCTCTCCGACTCCCTCACGGTCGTGAATTCGACCGTCCATTGGTCATCTTTGATCGAAGCTTTCTCTACAATGGCTCCATCTTCATGAATTCCACCGGCAATAATCCCTCTATACATCCCCAGTGGCAACCTGAATACTTCGGCGATGTTATTGTCGTCAACGGTAAAGCCTGGCCACGTTTGACAGTACGACGTCGCAAGTATCGATTCCGCATCATCAATGCTAGTAACGCTAGATTCTTCAAATTTTTCTTTACCAATGGCCTTAGATTCATACATGTAGGATCGGACTCGGCCTACCTTGCAAAACCTGTAGTTTCCAAGGCGATCCTACTGGCACCATCAGAGATTGCTGACGTGGTGGTTGACTTTTCAAAGTCAATGAGTGACACAGTCATCCTAGCCAACGGTGCAGCCTACCCTTATCCATCCGGGGATCCCGCAAGTGAAGGTAACAACAAAGTGATGAAATTTTATATTTCAAGAAAGAAAGAAGTTGAAACGCAGAGAGTTCCCAGCAAACTAATAGAGTACCCGAAACCAAAACTATCCGATGCATCGCACACTCGGTACATTGCCATGTACGAATACACGAGTGACATCGACGAGCCAATCCATCTATACATAAACGGAAAAAGGTATGAAGCACCAGTGACAGAGAAGCCAAAGGTAGGGAGCACAGAGATATGGTACGTGATCAATCTGACAGAGGACAATCATCCATTACACATTCACCTCGGGCTACTGGCCGCACTCGACCAGACAGAGCTGGTTCGGCTGGAAGAGTTTAAGGATTGCATGACGAGAAAAAACGATGCAGTGAAGTGCAAAATTGAACAACATGCACGTGGAAAACGGATTAAGGTAAGCAGTCATGAGAAAGGGTGGAAGAATGTCTACAAGATGATGCCTGGATATGTGACAAAGATACTGGTGAGGTTTTCCAACATACAATCGAACGCATCATACCCGTTCGATGCAACTGCAGAGCCTGGCTATGTTTACCATTGTCACATATTGGATCATGAAGACAATGAGATGATGAGACCATTGAAGCTGGTTGACTGA 1824 48.46 MMLPILFLFCCFSATTGFGSERLINPKKLPMFVDDLPEIPTLSGFHGRHSKHLRLGMFLKTWVCXINPKKLPMFVDDLPEIPTLSGFHGRHSKHLRLGMFLKTWKFHRDLPPTPVFAYGVSKDSATVPGPTIEAIHGISTYVTWENHLPDRHILPWDPTIPTAIPAGNRGIPTVVHLHGGITEPGSDGHATSWFTNGFKQKGPSWTNKTYHYNNHQHPGNLWYHDHAMGLTRVNLLAGLIGSYIIRHPHVEAPLRLPHGREFDRPLVIFDRSFLYNGSIFMNSTGNNPSIHPQWQPEYFGDVIVVNGKAWPRLTVRRRKYRFRIINASNARFFKFFFTNGLRFIHVGSDSAYLAKPVVSKAILLAPSEIADVVVDFSKSMSDTVILANGAAYPYPSGDPASEGNNKVMKFYISRKKEVETQRVPSKLIEYPKPKLSDASHTRYIAMYEYTSDIDEPIHLYINGKRYEAPVTEKPKVGSTEIWYVINLTEDNHPLHIHLGLLAALDQTELVRLEEFKDCMTRKNDAVKCKIEQHARGKRIKVSSHEKGWKNVYKMMPGYVTKILVRFSNIQSNASYPFDATAEPGYVYHCHILDHEDNEMMRPLKLVD 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16143714 16145831 - Cp4.1LG01g18900.1 Cpe01g01885 463198

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01885 607 PANTHER MULTI-COPPER OXIDASE 64 602 IPR045087 -
Cpe01g01885 607 CDD CuRO_1_BOD_CotA_like 94 248 - -
Cpe01g01885 607 Gene3D - 249 428 IPR008972 -
Cpe01g01885 607 SUPERFAMILY Cupredoxins 95 249 IPR008972 -
Cpe01g01885 607 CDD CuRO_3_CotA_like 439 605 - -
Cpe01g01885 607 CDD CuRO_2_CotA_like 262 413 - -
Cpe01g01885 607 Gene3D - 430 607 IPR008972 -
Cpe01g01885 607 SUPERFAMILY Cupredoxins 433 604 IPR008972 -
Cpe01g01885 607 Gene3D - 69 245 IPR008972 -
Cpe01g01885 607 SUPERFAMILY Cupredoxins 261 378 IPR008972 -
Cpe01g01885 607 Pfam Multicopper oxidase 310 381 IPR001117 -
Cpe01g01885 607 PANTHER MULTICOPPER OXIDASE LPR1 64 602 - -
Cpe01g01885 607 Pfam Multicopper oxidase 172 248 IPR011707 GO:0005507
Cpe01g01885 607 Pfam Multicopper oxidase 462 603 IPR011706 GO:0005507|GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01885 - - - csv:101213698 1008.82
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g407 . . . . . . . . . . . . . . . . Cpe01g01885 . . . . . . . . . . . . . . . Cone19ag0777 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006017 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 3 3 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01885 Cpe_Chr01 FPKM 8.6526 8.463081 52.31321 53.609032 289.911194 233.145844 276.744873 39.014832 38.181023 39.492661