Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01893 ATGAATGGGAAGGATGAGTTTGAAGATGAGTGTAGGACTAGTGATCCTATGAGTATCTCCTCTAGTTGGCAATTTGCTAATGAGTCGATTGGATTCGTTTCGACCGGGAATCCCTCGGTCGTTAGCAATGGAGATCTAGGTGTTTCTTCTTGTCCTTCAACTTCAATGTCGAACTTGTTTACTCCAACCGTGTTGAATGATCATACGAACTCGCAAAGCTCGAGGTTCTGCAGCGGTTTTAATGAACAAAACAGTATAGATGATTCTAATGTGACTGTTGTTGATGGGGAAGGTCTGAGTTCTTTGAGATCTAGTAGTGATAGAATTCTGGGTATGGATTGGAACCAACAAAGTTCATGGATGAAAGGAGTTTTCTCAGGGAATGTTCCTGGAATGTTTCCAGCTAATTTGTCTCAGCTACCAGCTGATTCGGCGTTCATAGAGCGTGCTGCACGGTTCTCTTGCTTCAATGGTGGCGTTTTCGGGGCTCCACCTGCTGGTTCATTTGGTATTTCAGGCTCTAATGGCATTCATTCTAGGGGTGCCTTTGGAAGTCAGGAACTAAACAAGGTTGTGTTGGAGGGTAAAGAAAAGAGTCCACCGAAGACCGAGAAAGAAAGCGAGATGTCTCGAGACAGGGCTAAACAAGGTTGTGTTGGTGAGTCTGGTAATGAATCTGATGAAACTGGGTTTAGTGGCGGTCAAGACGAGCAATGCACGTTGGGAGGTACCATTGCTGAACCATCTCGGGAAGGATTGTGCTTCAAGAAACGGAAAAGGGGCGATCGGAACGGAGACAAAGACCAAAATCCAAGTTTTACTACTAACAAGCCTGCTGGGAAGCAAGGAAAACAAGATTCTCAACCGTCGGATGCGCCCAAAGAAGAATATATTCACGTTAGAGCTCGAAGAGGCCAGGCGACGAACAGCCATAGTCTTGCCGAAAGGGTAAGAAGAGAAAAGATAAGTGAAAGAATGAGGCTCCTTCAAGACCTCGTGCCCGGGTGCAGTAAGGTCACTGGCAAAGCTGTAATGCTCGATGAGATCATTAACTATGTTCAATCGCTGCAACGACAAGTCGAGTTTTTGTCAATGAAACTTGCAACAGTTAATCCCAAGCTGGATTTTAACATCGAAGAGCTCCTTACAAAAGAAATCATGCAATCAAAGGCTGGTCCATCCTTATTTGGTTTCCCTCCTGATCTGCCTATGCCTTACCTCCCGCAACATCCGACTCACCATGGAGTTATTCCGCCTTGTATCCCGAACATGGGGAGCTCTCCCGACCTGCTACGAAGAACGATTAATTCCCAGTTGACATCACTTGTTGGTGGATTCAAGGAGCCTGTTCAGCTACCGAATGTATGGGAGAACGAGCTCCACAATGTCGTTCCAAGGAACTTCGACGTTGCTGCCCCTCCCAGTGGCCAAGATGTCGATGGCTCTACTCCACCATGCAACAACACCAGAGCAGAACTCTAA 1482 46.42 MNGKDEFEDECRTSDPMSISSSWQFANESIGFVSTGNPSVVSNGDLGVSSCPSTSMSNLFTPTVLNDHTNSQSSRFCSGFNEQNSIDDSNVTVVDGEGLSSLRSSSDRILGMDWNQQSSWMKGVFSGNVPGMFPANLSQLPADSAFIERAARFSCFNGGVFGAPPAGSFGISGSNGIHSRGAFGSQELNKVVLEGKEKSPPKTEKESEMSRDRAKQGCVGESGNESDETGFSGGQDEQCTLGGTIAEPSREGLCFKKRKRGDRNGDKDQNPSFTTNKPAGKQGKQDSQPSDAPKEEYIHVRARRGQATNSHSLAERVRREKISERMRLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPKLDFNIEELLTKEIMQSKAGPSLFGFPPDLPMPYLPQHPTHHGVIPPCIPNMGSSPDLLRRTINSQLTSLVGGFKEPVQLPNVWENELHNVVPRNFDVAAPPSGQDVDGSTPPCNNTRAEL 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16191739 16194342 - Cp4.1LG01g18930.1 Cpe01g01893 463206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01893 493 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 306 356 IPR011598 GO:0046983
Cpe01g01893 493 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 267 487 IPR024097 GO:0006355
Cpe01g01893 493 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 38 162 IPR024097 GO:0006355
Cpe01g01893 493 PANTHER TRANSCRIPTION FACTOR BHLH49 184 262 - -
Cpe01g01893 493 MobiDBLite consensus disorder prediction 471 493 - -
Cpe01g01893 493 CDD bHLH_AtBPE_like 296 381 - -
Cpe01g01893 493 MobiDBLite consensus disorder prediction 251 267 - -
Cpe01g01893 493 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 184 262 IPR024097 GO:0006355
Cpe01g01893 493 SMART finulus 312 362 IPR011598 GO:0046983
Cpe01g01893 493 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 304 375 IPR036638 GO:0046983
Cpe01g01893 493 MobiDBLite consensus disorder prediction 193 215 - -
Cpe01g01893 493 MobiDBLite consensus disorder prediction 268 287 - -
Cpe01g01893 493 PANTHER TRANSCRIPTION FACTOR BHLH49 267 487 - -
Cpe01g01893 493 PANTHER TRANSCRIPTION FACTOR BHLH49 38 162 - -
Cpe01g01893 493 Pfam Helix-loop-helix DNA-binding domain 309 357 IPR011598 GO:0046983
Cpe01g01893 493 Gene3D - 303 377 IPR036638 GO:0046983
Cpe01g01893 493 Coils Coil 486 493 - -
Cpe01g01893 493 MobiDBLite consensus disorder prediction 222 239 - -
Cpe01g01893 493 MobiDBLite consensus disorder prediction 193 293 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01893 Cpe-Chr1:16191739 Cpe09g00247 Cpe-Chr9:1420189 2.55E-93 dispersed
Cpe01g01893 Cpe-Chr1:16191739 Cpe13g00466 Cpe-Chr13:4893153 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48900 PF00010 HLH 5.90E-06 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01893 - - csv:101216110 798.119