Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01903 ATGTTGAGTTCAGCAAGCAGCACAGCAATAAAAGCTGCTCCTTTTTTCTTCTTGTCATTTGATGAACCTACAGCAGCAAGTTTAATGGAAATTAGGAGAAAAAGTGGGTTACTGTCTTGCTTGGCTTTGGTTTGGTTATGGGCTTCTGCAACTGCAACTTCAACGGGCATTCGTTTAAACGTTGAAGTTCAAGCTTTGATGGGAATCAAAGCTGGTTTGAAGGATCCTCATTCTGTTCTAGCTTGGGATGAAAATGCTGTGGATCCATGCACTTGGAATTTAATCACTTGCTCTCCTGATAAACTTGTGATTGGCATAGGAGCTCCAAGCCAAAACTTTTCTGGGACACTCTCACCAAGTATTGGAAATTTGACAAACCTTCAATTTTTGCTTCTTCAGAATAATTATATATCAGGAAAAGTTCCTAACGAGATTAGCAAGATACCGAAACTTCACACACTTGATCTTTCAAACAACTTGTTTTCTGGTGAAGTTCCTAGCTCTTTCTCCAATTTGAAGAGCCTCCAATACCTGAGACTCAACAATAACACCTTCTCTGGGACAATCCCATCATCACTGGCTAACATGAACCAGCTTGCCTTGCTGGATCTGTCCTATAATAATTTGAGCGGTCCTCTGCCCAGATTGTTGGCTAAGACATATAACTTTACTGGAAATTCTTTGATTTGTGCCCCTGGCTCTAAGGAAGTATGCTACGGAACAACTCCATTGCCACTTTCTTTTGCTGTCACTAATTCCACATACTCCCAACCTCCTAGGAGACATAAAGGCCAGAGAATTGCTCTAGTCATTGGCCTCAGCTTGGCCTGCATCTGTCTGTTAACTCTTGCATATGGTTTCTTTATCTGGCGGAAGCATAGGCGCAACCAGCAAATATTCTTCGAAACTAATGATCGGCACCATGAAGAACTTAGCCTTGGAAACATAAAGAGGTTTCAGTTCAAAGAACTTCGGAACGCCACTCACAATTTCAGCAGTAAAAACTTGATTGGAAAAGGTGGATTTGGAAATGTTTACAGAGGATATCTACAAGATGGCACCATTATAGCTGTCAAGAGACTCAAAGATGGGAATGCTATGAGAGGAGAGACCCAATTTCAGACTGAAGTGGAGATGATAAGCTTGGCAGTGCATAGAAACCTCCTCAAGCTGTATGGTTTCTGTATGACAGAAACTGAGAGGCTTTTGGTCTATCCATATATGTCTAATGGCAGTGTTGCTACTCGTCTTAAAGCAAAACCAGCTCTGGATTGGGGTACAAGGAAGAGAATTGCCTTGGGAGCTGCAAGGGGCTTGTTATACTTACATGAGCAGTGTGATCCAAAAATAATTCACAGAGATGTGAAAGCTGCAAATATACTGCTTGATGATTTCTGCGAGGCAGTAGTCGGTGATTTTGGGCTCGCAAAGCTACTAGATCACAGTGATTCACATGTCACTACTGCTGTGAGAGGAACTGTTGGGCACATTGCACCAGAGTATCTGTCAACCGGCCAATCCTCAGAGAAAACTGATGTTTTCGGGTTTGGAATTCTATTACTTGAGCTTGTATCAGGTCAAAGAGCTCTTGAATTTGGAAAAGCAGCAAACCAAAAGGGTGCCATACTAGACTGGATAAAGAAGCTACACCAAGAAAAGAAGTTAGAAATGCTTGTTGACAAAGACTTGAGAAGCAATTATGACCCAATAGAAATTGAAGAAATTGTTCGAGTAGCTCTCTTGTGCATCCAATATCTTCCAAGCAATAGGCCAAAGATGTCTGAAGTGGTCAGGATGCTTGAAGGAGATGGGCTTGCAGAGAAATGGGAAGCTTCCCAAAGAGCAGAAGCAAGCAGGGTGAGAGCCAATGAGTTCTCCTCTTCAGAACGTTACTCTGATCTTACTGACGACGCTTCATTGTTTGCTCAAGCAATAGAGCTCTCAGGACCAAGATAA 1956 42.23 MLSSASSTAIKAAPFFFLSFDEPTAASLMEIRRKSGLLSCLALVWLWASATATSTGIRLNVEVQALMGIKAGLKDPHSVLAWDENAVDPCTWNLITCSPDKLVIGIGAPSQNFSGTLSPSIGNLTNLQFLLLQNNYISGKVPNEISKIPKLHTLDLSNNLFSGEVPSSFSNLKSLQYLRLNNNTFSGTIPSSLANMNQLALLDLSYNNLSGPLPRLLAKTYNFTGNSLICAPGSKEVCYGTTPLPLSFAVTNSTYSQPPRRHKGQRIALVIGLSLACICLLTLAYGFFIWRKHRRNQQIFFETNDRHHEELSLGNIKRFQFKELRNATHNFSSKNLIGKGGFGNVYRGYLQDGTIIAVKRLKDGNAMRGETQFQTEVEMISLAVHRNLLKLYGFCMTETERLLVYPYMSNGSVATRLKAKPALDWGTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDFCEAVVGDFGLAKLLDHSDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELVSGQRALEFGKAANQKGAILDWIKKLHQEKKLEMLVDKDLRSNYDPIEIEEIVRVALLCIQYLPSNRPKMSEVVRMLEGDGLAEKWEASQRAEASRVRANEFSSSERYSDLTDDASLFAQAIELSGPR 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16231976 16236544 - Cp4.1LG01g19060.1 Cpe01g01903 463216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01903 651 Pfam Leucine rich repeat 149 209 IPR001611 GO:0005515
Cpe01g01903 651 SUPERFAMILY Protein kinase-like (PK-like) 309 601 IPR011009 -
Cpe01g01903 651 Gene3D Ribonuclease Inhibitor 59 240 IPR032675 -
Cpe01g01903 651 Pfam Leucine rich repeat N-terminal domain 60 98 IPR013210 -
Cpe01g01903 651 SUPERFAMILY L domain-like 62 228 - -
Cpe01g01903 651 ProSitePatterns Protein kinases ATP-binding region signature. 337 359 IPR017441 GO:0005524
Cpe01g01903 651 SMART serkin_6 331 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g01903 651 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 34 651 - -
Cpe01g01903 651 ProSiteProfiles Protein kinase domain profile. 331 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g01903 651 Pfam Protein kinase domain 332 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g01903 651 Gene3D Transferase(Phosphotransferase) domain 1 408 620 - -
Cpe01g01903 651 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 34 651 - -
Cpe01g01903 651 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Cpe01g01903 651 Gene3D Phosphorylase Kinase; domain 1 300 407 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01903 Cpe-Chr1:16231976 Cpe01g02453 Cpe-Chr1:20327024 0 dispersed
Cpe16g00667 Cpe-Chr16:6989639 Cpe01g01903 Cpe-Chr1:16231976 6.30E-42 dispersed
Cpe01g01903 Cpe-Chr1:16231976 Cpe09g00254 Cpe-Chr9:1462093 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62167 PF00069 Pkinase 1.50E-44 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01903 - - csv:101222667 1099.35