Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01907 ATGGGTGTTGCTGTGGCTGTTGATGTTGAAACCACTCGGTTTCATGTTCTTGCTGTTGATGATAGCTTCATCGATCGGAAATTGATCGAGCGCCTCCTCAAAACCTCCTCCTATCACGTTACTGCTGTTGATTCCGGTACCAAGGCCTTGGAATTTCTCGGTCTTGTTGAAGATCCTGATCTCGATGATGATGTTGATGATGAACAACACTCCAAACTCCCCCCCTCAATTCAAGAATCGAAATCTCTTAAAGACATACCAGTTGTGATCATGTCCTCTGAGAATGTTCCTTCAAGAATCAACAGATGCTTGGAAGAAGGAGCGGAAGAGTTCTTCCTCAAACCAGTTCAATTGTCCGATGTCAGGAAACTGAGACCTCATTTGATTAAAGAAAAATCCACAAGGAATTGA 411 43.31 MGVAVAVDVETTRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLDDDVDDEQHSKLPPSIQESKSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTRN 136
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16277394 16278797 + Cp4.1LG01g18980.1 Cpe01g01907 463220

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01907 136 PANTHER TWO-COMPONENT RESPONSE REGULATOR 77 134 IPR045279 GO:0009736
Cpe01g01907 136 SMART REC_2 14 125 IPR001789 GO:0000160
Cpe01g01907 136 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 65 IPR045279 GO:0009736
Cpe01g01907 136 PANTHER RESPONSE REGULATOR ARR8, PUTATIVE-RELATED 8 65 - -
Cpe01g01907 136 Pfam Response regulator receiver domain 16 123 IPR001789 GO:0000160
Cpe01g01907 136 Gene3D - 7 65 - -
Cpe01g01907 136 Gene3D - 76 135 - -
Cpe01g01907 136 ProSiteProfiles Response regulatory domain profile. 15 129 IPR001789 GO:0000160
Cpe01g01907 136 SUPERFAMILY CheY-like 13 125 IPR011006 -
Cpe01g01907 136 PANTHER RESPONSE REGULATOR ARR8, PUTATIVE-RELATED 77 134 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01907 K14492 ARR-A; two-component response regulator ARR-A family - csv:101210839 185.652
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01907 Cpe-Chr1:16277394 Cpe03g00456 Cpe-Chr3:2621577 1.26E-52 dispersed
Cpe13g00625 Cpe-Chr13:6004192 Cpe01g01907 Cpe-Chr1:16277394 1.73E-22 dispersed
Cpe01g00082 Cpe-Chr1:492527 Cpe01g01907 Cpe-Chr1:16277394 1.82E-33 transposed
Cpe01g01907 Cpe-Chr1:16277394 Cpe13g00476 Cpe-Chr13:4958240 8.13E-69 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g976 . . . . . . . . . . . . . . . . Cpe01g01907 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g02298 . Cma04g02197 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000219 2 6 2 4 4 5 9 5 5 3 5 5 8 5 5 8 5 6 7 5 5 5 6 6 6 5 4 13 7 2 163
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48902 PF00072 Response_reg 4.10E-10 CL0304 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01907 Cpe_Chr01 FPKM 9.788288 11.053467 6.001885 6.899566 8.159769 8.298036 8.508426 5.937594 5.744228 6.158872