Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01921 ATGGCATCTGGAAATCCTTGTTTTGATGATGTGCGGAGCAAACCAGAGGTTATTGATCCTCCACAAAATCAAGATATGATGGACATCAGGGAAGCTGTGGATGGTCCAACTCAAAATGAACTTAAACCTAATGTTGCTGTTTCCAGCAGTGTTCGCCAGCTTTTGGAATGCCCAGTGTGTTTGAATGCAATGTACCCTCCAATACATCAGTGTTCAAATGGTCACACACTGTGTTCGGATTGCAAGCCTAGGGTGCACAATCGGTGCCCTACGTGCAGGCACGAACTTGGCAATATTCGATGCCTTGCATTGGAGAAGGTGGCTGCATCGCTAGAACTTCCATGTAAATATCAGAGCTATGGTTGCATTGGCATATATCCTTATTACAGCAAGGTCAAACATGAATCCCAATGTATTTACAGACCTTATAGTTGTCCATACGCTGGATCAGAATGTTTGGTCGTTGGTGATATACCCTATTTGGTGGCCCATCTCAAAGATGATCATAAAGTAGACATGCACAGTGGAAGCACATTCAACCATCGATACGTAAAATCAAACCCTCAAGAAGTCGAAAACGCAACGTGGATGCTAACGGTTTTCAGTTGCTTTGGTCATTACTTTTGCCTGCATTTCGAAGCTTTCCAGCTCGGAATGGCTCCAGCATACATAGCATTCTTGCGGTTCATGGGCGATGACGACGATGCAAAGAACTACAGCTATAGTCTCGAAGTGGGTGGAAATGGGAGGAAGATAGTATGGCAAGGGGTGCCCAGAAGCATCAGGGACAGCCATCGAAAAGTTCGGGATAGTTTCGACGGGCTCATTATCCAATGTAACATGGCTCTCTTCTTCTCTGGTGGAGACCGTAAGGAACTGAAGCTTAGGGTGACTGGTAGAATTTGGAAAGAACAGGAGACTGGGAGAACAGCTTATGATGAAACTTTCAGTTCAAATCCTATCTTCTTGTCCAGTAGTCGGTTTCCTTTTTGTAGAGTAAATGAGGCTTTCTAA 1014 44.58 MASGNPCFDDVRSKPEVIDPPQNQDMMDIREAVDGPTQNELKPNVAVSSSVRQLLECPVCLNAMYPPIHQCSNGHTLCSDCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCIGIYPYYSKVKHESQCIYRPYSCPYAGSECLVVGDIPYLVAHLKDDHKVDMHSGSTFNHRYVKSNPQEVENATWMLTVFSCFGHYFCLHFEAFQLGMAPAYIAFLRFMGDDDDAKNYSYSLEVGGNGRKIVWQGVPRSIRDSHRKVRDSFDGLIIQCNMALFFSGGDRKELKLRVTGRIWKEQETGRTAYDETFSSNPIFLSSSRFPFCRVNEAF 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16382552 16385712 + Cp4.1LG01g19110.1 Cpe01g01921 463234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01921 337 ProSiteProfiles Zinc finger SIAH-type profile. 110 170 IPR013010 GO:0008270
Cpe01g01921 337 SUPERFAMILY RING/U-box 50 97 - -
Cpe01g01921 337 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 166 298 IPR008974 GO:0005515
Cpe01g01921 337 SUPERFAMILY TRAF domain-like 110 302 - -
Cpe01g01921 337 MobiDBLite consensus disorder prediction 1 23 - -
Cpe01g01921 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 109 IPR013083 -
Cpe01g01921 337 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 13 305 - -
Cpe01g01921 337 CDD Sina 171 299 - -
Cpe01g01921 337 Pfam Seven in absentia protein family 99 298 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cpe01g01921 337 CDD RING-HC_SIAHs 55 93 - -
Cpe01g01921 337 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 13 305 - -
Cpe01g01921 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 165 IPR013083 -
Cpe01g01921 337 ProSiteProfiles Zinc finger RING-type profile. 57 93 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01921 Cpe-Chr1:16382552 Cpe09g00442 Cpe-Chr9:2830330 0 dispersed
Cpe01g01921 Cpe-Chr1:16382552 Cpe13g00488 Cpe-Chr13:5045754 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01921 K04506 - csv:101220834 615.15