Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01923 ATGTCAACCCAGTCGAAGAACTCCGATTCAAATGCCGTTTCAGGCCATTACTCATATTGCTTAAGAATTGCGTTTGTCTCTTCGATCTTCTGTTTCCAGATTCAGAAATGCGAGGCTGGGACTGGAGTCGAATGCCCTCTGATTCAGAAACGCAACAGTGGAACTGGAAAAAGGATCAACAGCTCTCTGTGTACTTGTGGTGATCAAATATGGCATCCATTTCCTCCTTCCAAAGAAGGCCCCCAGAAAAGGTTGGAAGATCTGTTGCGCCAATCTGGTAATAAGTTATGTGCAGATTGTGGCTCACCAGATCCGAAATGGGTATCGTTAAATTTGGGAGTATTTATCTGTATAAAGTGTTCTGGAGTACACAGAAGTCTTGGAGTTCATATCTCTAAGGTTTTCTCAGTGAAGCTAGATAATTGGACGGATGAACAAGTCAATACTTTTATAAGCATGGGTGGAAACGCAGATGTAAACAAGAAATATGAAGCCGGCATCATAGATTTGACCAGGAAACCAAAACCAGATTCCTGTATAGAGGAGCGCTTTGAGTTTATAAGGAGAAAGTATGAACTGCTACAATTTTATAACGGCAATGGTCATAATTCTAGTGATGGCTCAGTTAATAAAAGGATTTCACCATGCTCTCAAATTAACTCTTCAAGCAAGAATGGTTCCCAGGACAAAAGGCAATATGAGAAACTAGCTACTAGGCATCGCATTGCGAATGCGTTTCGTAACAGCCGAGTTAAAAGAGATAGTGACCACAAGAGTTTCGACAAGAGCAACCCTTCAATCTCAAGACTAGCGTCAGCAGGTATGGTCGAGTTCGTCGGGTTGGTTAAGGTCAATGTGGTTAGAGGCACGAACCTAGCTATTAGAGACGTGGTGTCCAGTGATCCCTATGTAATTCTCGTATTGGGTCACCAATCGGTGAGGACTCGCGTCATAAAGAGCAACCTTAACCCAGTTTGGAATGAGAGCCTAATGTTGTCGATTCCCGAACATATACCTCCGCTAAAAGTGCTTGTCTATGATAAGGACACATTTTCCACTGATGACTTCATGGGCGAGGCCGAAATCGACATTCAACCATTGGTTGCAGCCACAAGGGCGTACGAGAAGTCGACAATTGATGAATCAATGCAGCTGGGAAAATGGGTGGCAAGTAATGACAATACGTTGGTAAAAGATGGAATCATTAACCTTGTAGATGGAAAGGTTAGACAGGATATATCTCTTAGATTGCAGAATGTGGAGAGAGGTGTTCTTGAGGTTGAGCTAGAATGCATTCCACTCACACAATAG 1311 42.87 MSTQSKNSDSNAVSGHYSYCLRIAFVSSIFCFQIQKCEAGTGVECPLIQKRNSGTGKRINSSLCTCGDQIWHPFPPSKEGPQKRLEDLLRQSGNKLCADCGSPDPKWVSLNLGVFICIKCSGVHRSLGVHISKVFSVKLDNWTDEQVNTFISMGGNADVNKKYEAGIIDLTRKPKPDSCIEERFEFIRRKYELLQFYNGNGHNSSDGSVNKRISPCSQINSSSKNGSQDKRQYEKLATRHRIANAFRNSRVKRDSDHKSFDKSNPSISRLASAGMVEFVGLVKVNVVRGTNLAIRDVVSSDPYVILVLGHQSVRTRVIKSNLNPVWNESLMLSIPEHIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVAATRAYEKSTIDESMQLGKWVASNDNTLVKDGIINLVDGKVRQDISLRLQNVERGVLEVELECIPLTQ 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16392230 16402034 + Cp4.1LG01g19140.1 Cpe01g01923 463236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01923 436 MobiDBLite consensus disorder prediction 204 227 - -
Cpe01g01923 436 SMART arf_gap_3 82 205 IPR001164 GO:0005096
Cpe01g01923 436 Gene3D Arf GTPase activating protein 75 204 IPR038508 -
Cpe01g01923 436 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD11-RELATED 77 436 - -
Cpe01g01923 436 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 277 372 IPR035892 -
Cpe01g01923 436 CDD ArfGap 85 191 - -
Cpe01g01923 436 SUPERFAMILY ArfGap/RecO-like zinc finger 82 198 IPR037278 -
Cpe01g01923 436 PRINTS HIV Rev interacting protein signature 134 155 IPR001164 GO:0005096
Cpe01g01923 436 PRINTS HIV Rev interacting protein signature 94 113 IPR001164 GO:0005096
Cpe01g01923 436 PRINTS HIV Rev interacting protein signature 113 130 IPR001164 GO:0005096
Cpe01g01923 436 Gene3D C2 domain 279 435 IPR035892 -
Cpe01g01923 436 CDD C2_ArfGAP 279 423 - -
Cpe01g01923 436 SMART C2_3c 281 376 IPR000008 -
Cpe01g01923 436 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 77 436 IPR044518 GO:0005096|GO:0005543
Cpe01g01923 436 ProSiteProfiles ARF GTPase-activating proteins domain profile. 82 204 IPR001164 GO:0005096
Cpe01g01923 436 MobiDBLite consensus disorder prediction 204 232 - -
Cpe01g01923 436 Pfam Putative GTPase activating protein for Arf 83 197 IPR001164 GO:0005096
Cpe01g01923 436 ProSiteProfiles C2 domain profile. 261 378 IPR000008 -
Cpe01g01923 436 Pfam C2 domain 281 371 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01923 Cpe-Chr1:16392230 Cpe19g01173 Cpe-Chr19:7898767 5.48E-117 dispersed
Cpe08g00039 Cpe-Chr8:242868 Cpe01g01923 Cpe-Chr1:16392230 1.57E-16 dispersed
Cpe01g01210 Cpe-Chr1:7221217 Cpe01g01923 Cpe-Chr1:16392230 9.18E-178 transposed
Cpe09g00441 Cpe-Chr9:2825759 Cpe01g01923 Cpe-Chr1:16392230 3.42E-165 transposed
Cpe01g01923 Cpe-Chr1:16392230 Cpe13g00490 Cpe-Chr13:5053254 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01923 K12486 - csv:101215531 620.542