Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe01g01923 | ATGTCAACCCAGTCGAAGAACTCCGATTCAAATGCCGTTTCAGGCCATTACTCATATTGCTTAAGAATTGCGTTTGTCTCTTCGATCTTCTGTTTCCAGATTCAGAAATGCGAGGCTGGGACTGGAGTCGAATGCCCTCTGATTCAGAAACGCAACAGTGGAACTGGAAAAAGGATCAACAGCTCTCTGTGTACTTGTGGTGATCAAATATGGCATCCATTTCCTCCTTCCAAAGAAGGCCCCCAGAAAAGGTTGGAAGATCTGTTGCGCCAATCTGGTAATAAGTTATGTGCAGATTGTGGCTCACCAGATCCGAAATGGGTATCGTTAAATTTGGGAGTATTTATCTGTATAAAGTGTTCTGGAGTACACAGAAGTCTTGGAGTTCATATCTCTAAGGTTTTCTCAGTGAAGCTAGATAATTGGACGGATGAACAAGTCAATACTTTTATAAGCATGGGTGGAAACGCAGATGTAAACAAGAAATATGAAGCCGGCATCATAGATTTGACCAGGAAACCAAAACCAGATTCCTGTATAGAGGAGCGCTTTGAGTTTATAAGGAGAAAGTATGAACTGCTACAATTTTATAACGGCAATGGTCATAATTCTAGTGATGGCTCAGTTAATAAAAGGATTTCACCATGCTCTCAAATTAACTCTTCAAGCAAGAATGGTTCCCAGGACAAAAGGCAATATGAGAAACTAGCTACTAGGCATCGCATTGCGAATGCGTTTCGTAACAGCCGAGTTAAAAGAGATAGTGACCACAAGAGTTTCGACAAGAGCAACCCTTCAATCTCAAGACTAGCGTCAGCAGGTATGGTCGAGTTCGTCGGGTTGGTTAAGGTCAATGTGGTTAGAGGCACGAACCTAGCTATTAGAGACGTGGTGTCCAGTGATCCCTATGTAATTCTCGTATTGGGTCACCAATCGGTGAGGACTCGCGTCATAAAGAGCAACCTTAACCCAGTTTGGAATGAGAGCCTAATGTTGTCGATTCCCGAACATATACCTCCGCTAAAAGTGCTTGTCTATGATAAGGACACATTTTCCACTGATGACTTCATGGGCGAGGCCGAAATCGACATTCAACCATTGGTTGCAGCCACAAGGGCGTACGAGAAGTCGACAATTGATGAATCAATGCAGCTGGGAAAATGGGTGGCAAGTAATGACAATACGTTGGTAAAAGATGGAATCATTAACCTTGTAGATGGAAAGGTTAGACAGGATATATCTCTTAGATTGCAGAATGTGGAGAGAGGTGTTCTTGAGGTTGAGCTAGAATGCATTCCACTCACACAATAG | 1311 | 42.87 | MSTQSKNSDSNAVSGHYSYCLRIAFVSSIFCFQIQKCEAGTGVECPLIQKRNSGTGKRINSSLCTCGDQIWHPFPPSKEGPQKRLEDLLRQSGNKLCADCGSPDPKWVSLNLGVFICIKCSGVHRSLGVHISKVFSVKLDNWTDEQVNTFISMGGNADVNKKYEAGIIDLTRKPKPDSCIEERFEFIRRKYELLQFYNGNGHNSSDGSVNKRISPCSQINSSSKNGSQDKRQYEKLATRHRIANAFRNSRVKRDSDHKSFDKSNPSISRLASAGMVEFVGLVKVNVVRGTNLAIRDVVSSDPYVILVLGHQSVRTRVIKSNLNPVWNESLMLSIPEHIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVAATRAYEKSTIDESMQLGKWVASNDNTLVKDGIINLVDGKVRQDISLRLQNVERGVLEVELECIPLTQ | 436 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 16392230 | 16402034 | + | Cp4.1LG01g19140.1 | Cpe01g01923 | 463236 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe01g01923 | 436 | MobiDBLite | consensus disorder prediction | 204 | 227 | - | - | |
Cpe01g01923 | 436 | SMART | arf_gap_3 | 82 | 205 | IPR001164 | GO:0005096 | |
Cpe01g01923 | 436 | Gene3D | Arf GTPase activating protein | 75 | 204 | IPR038508 | - | |
Cpe01g01923 | 436 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD11-RELATED | 77 | 436 | - | - | |
Cpe01g01923 | 436 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 277 | 372 | IPR035892 | - | |
Cpe01g01923 | 436 | CDD | ArfGap | 85 | 191 | - | - | |
Cpe01g01923 | 436 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 82 | 198 | IPR037278 | - | |
Cpe01g01923 | 436 | PRINTS | HIV Rev interacting protein signature | 134 | 155 | IPR001164 | GO:0005096 | |
Cpe01g01923 | 436 | PRINTS | HIV Rev interacting protein signature | 94 | 113 | IPR001164 | GO:0005096 | |
Cpe01g01923 | 436 | PRINTS | HIV Rev interacting protein signature | 113 | 130 | IPR001164 | GO:0005096 | |
Cpe01g01923 | 436 | Gene3D | C2 domain | 279 | 435 | IPR035892 | - | |
Cpe01g01923 | 436 | CDD | C2_ArfGAP | 279 | 423 | - | - | |
Cpe01g01923 | 436 | SMART | C2_3c | 281 | 376 | IPR000008 | - | |
Cpe01g01923 | 436 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 | 77 | 436 | IPR044518 | GO:0005096|GO:0005543 | |
Cpe01g01923 | 436 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 82 | 204 | IPR001164 | GO:0005096 | |
Cpe01g01923 | 436 | MobiDBLite | consensus disorder prediction | 204 | 232 | - | - | |
Cpe01g01923 | 436 | Pfam | Putative GTPase activating protein for Arf | 83 | 197 | IPR001164 | GO:0005096 | |
Cpe01g01923 | 436 | ProSiteProfiles | C2 domain profile. | 261 | 378 | IPR000008 | - | |
Cpe01g01923 | 436 | Pfam | C2 domain | 281 | 371 | IPR000008 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g01923 | Cpe-Chr1:16392230 | Cpe19g01173 | Cpe-Chr19:7898767 | 5.48E-117 | dispersed | |
Cpe08g00039 | Cpe-Chr8:242868 | Cpe01g01923 | Cpe-Chr1:16392230 | 1.57E-16 | dispersed | |
Cpe01g01210 | Cpe-Chr1:7221217 | Cpe01g01923 | Cpe-Chr1:16392230 | 9.18E-178 | transposed | |
Cpe09g00441 | Cpe-Chr9:2825759 | Cpe01g01923 | Cpe-Chr1:16392230 | 3.42E-165 | transposed | |
Cpe01g01923 | Cpe-Chr1:16392230 | Cpe13g00490 | Cpe-Chr13:5053254 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe01g01923 | K12486 | - | csv:101215531 | 620.542 |