Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe01g01959 | ATGAACAGGCTGAAGTTTCTTTTTCAGAAGGAGCTGAAGAACAGTGATGTTAGCTCTCTCAGGAGAATGATACTCCCAAAGAAAGCTGCTGAAACTCACCTCCCTACTTTGGAGTCTAAAGAAGGAATCATCATCACCATGGATGACTTGGATGGAGTCCATGTTTGGAACTTTAAATATAGGTTTTGGCCGAATAACAATAGTAGAATGTACGTACTTGAAAACACGGGGGACTTCGTCAACGCCCATGGCATACAACTAGGAGATTTCATCTTGGTTTACCAAGATTTTGAAGATCATAGCTACGTCATTCAAGCAAAAAAGGCGTCCGATCCAGAAATATATTCCGACATAGCAAATAGTTGCGTTATGAATGGCGATATTGTGTTTCAAGACTTCAATGCTAGCAAAGCTGCTAACTCTATGTACGTGCCTAGTTCAACTATGGACGATCCCGTGTCATCGTTCATCTACGACACTAGCTCAGCTTTCGATAACGATTCGTCGTTTGACTTTATGAGTAGCTCAATGACCAACTACTCGAGAATGGGAGGTATCGAAGGCTTTGGATCAGTCGAGAACTTGTCGCTCGATGACTTCTACTAA | 606 | 42.08 | MNRLKFLFQKELKNSDVSSLRRMILPKKAAETHLPTLESKEGIIITMDDLDGVHVWNFKYRFWPNNNSRMYVLENTGDFVNAHGIQLGDFILVYQDFEDHSYVIQAKKASDPEIYSDIANSCVMNGDIVFQDFNASKAANSMYVPSSTMDDPVSSFIYDTSSAFDNDSSFDFMSSSMTNYSRMGGIEGFGSVENLSLDDFY | 201 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 16714403 | 16715381 | - | Cp4.1LG01g19630.1 | Cpe01g01959 | 463272 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe01g01959 | 201 | Gene3D | - | 4 | 121 | IPR015300 | - | |
| Cpe01g01959 | 201 | CDD | B3_DNA | 6 | 108 | IPR003340 | GO:0003677 | |
| Cpe01g01959 | 201 | ProSiteProfiles | B3 DNA-binding domain profile. | 8 | 110 | IPR003340 | GO:0003677 | |
| Cpe01g01959 | 201 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR FUS3 | 3 | 201 | - | - | |
| Cpe01g01959 | 201 | Pfam | B3 DNA binding domain | 8 | 106 | IPR003340 | GO:0003677 | |
| Cpe01g01959 | 201 | SUPERFAMILY | DNA-binding pseudobarrel domain | 6 | 103 | IPR015300 | - | |
| Cpe01g01959 | 201 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 3 | 201 | IPR044800 | GO:0003700 | |
| Cpe01g01959 | 201 | SMART | B3_2 | 8 | 110 | IPR003340 | GO:0003677 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe01g01959 | Cpe-Chr1:16714403 | Cpe12g01066 | Cpe-Chr12:8893190 | 2.63E-40 | dispersed | |
| Cpe01g01959 | Cpe-Chr1:16714403 | Cpe13g00523 | Cpe-Chr13:5335659 | 9.18E-102 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 48906 | PF02362 | B3 | 2.50E-17 | CL0405 | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe01g01959 | - | - | cmo:103504182 | 326.635 |