Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01963 ATGTTATCGATTGAGAGTGATTGGGTAAAGCTTGATATGAAGCTTTCAACATCAGGGTTTGGTCAGCAGGATCACGAAGGAGGGGAAAAGAAATGCTTGAATTCAGAGCTATGGCATGCATGCGCGGGGCCCCTTGTGTCCCTCCCAACTTCTGGGACTCGGGTTGTCTACTTCCCTCAGGGGCACAGCGAACAGGTTGCTGCCACAACCAACAAAGAAGTTGATGGGCATATACCGAATTACCCGAACCTGCCTCCCCAGTTGATATGTCAACTTCACAACGTTACGATGCATGCAGATGTGGAAACGGATGAAGTATACGCTCAAATGACATTACAGCCGCTGACTGCACAAGAGCAAAAGGATACATTTCTACCTATGGAATTGGGGATTCCAAGTAGACAGCCAACAAATTACTTTTGCAAGACGTTGACTGCAAGTGATACGAGCACTCATGGAGGATTCTCTGTACCTCGTCGTGCTGCTGAGAAAGTTTTTCCTCCGCTGGACTTTTCACAGCAGCCACCAGCACAAGAGCTGATTGCGCGGGATCTTCATGATGTTGAATGGAAGTTTAGGCATATTTTTCGAGGCAAGTCCCCTTATGTTCGGAACGAAAAAAATCAGCTTCTTTTGGGTATACGCCGTGCCACAAGACCACAAACTGTGATGCCCTCTTCTGTTTTATCAAGTGATAGCATGCACATTGGACTCCTTGCGGCTGCTGCTCATGCTGCCGCAACCAATAGCTGTTTCACAGTTTTCTACAACCCCAGGGCTAGCCCATCAGAGTTTGTCATCCCTCTGACAAAATATGTTAAAGCTGTATTTCATACCCGTGTTTCAGTAGGGATGCGTTTTCGGATGCTTTTTGAGACTGAAGAGTCGAGCGTTCGAAGGTACATGGGTACTATAACTGGAATAAGTGATCTCGATCCTGTTCGTTGGTCGAATTCTCATTGGCGTTCTGTCAAGTTCAGTGTCAGCTTTTCTACTGTGAAGGTCGGGTGGGATGAGTCAACAGCTGGGGAGAGGCAGCCAAGGGTATCGTTGTGGGAAATTGAGCCTTTAACTACATTTCCGATGTACCCTTCCCTTTTTCCGCTTCGATTGAAACGTCCATGGCATCCTGGAGTCTCGTCTGTTCATGATAACAGAGATGATGCATCGAATGGCTTAATGTGGCTACGGGGAGGAGTCGGGGAACAAGCTCTACACTCGCTGAATTTGCAATCCGCGGGTTCACTGCCCTGGTTGCAGCAGAGACTTGATTCTTCCATGTTTGGAAATGATCATAACCAACAGTATCAAGCCATGTTGGCTGCTGGAATGCCGAACCTTGGAGGTGTCGATATGCTGAGACAGCAGATTATGCATCTTCAACAGCCGTTCCAATACGCTCAACAGGCAGGCCTCCATAATTCTCTGTTGCAGCTGCAACAACATCAATTGGTTCAACAATCTATGTCTCAGAACATCCTGCAAGCACCAAGCCAAGTTATGGCAGAAAACCTACCCCAACACATTCTTCAGCAAACGCTACAAAATCAACCCGAGGATCTGCCGAACCAGCAACAACATACGTATCACGATACCGTTCAGGTTCAAAGCAATCAATTTCATCAGGGCGGGCATTCAAACGTGCCATCGCCCACGTTTCCCAGATCAAACCTTGTGGATTCGAATTCAAATTACCCAGAATCCATTTCCTCTAGAAGAAACATAATTGCTTCATCATGTGCTGAAGGGACTGGAAATCTTTCCAATATTTATAGAAGCGGGCAATCGATCTTAACCGAGCAGTTACCTCAACAATCTCCTGTTTCTAAGAATGCTCATTCACCGGTTGACGCTCACCCAAACTCGATGTCCTTTCCATTTTCTGGTAGAGACTCGATTTTGGAGCTGGGAAATTGTAACTCAGATTCTCCAAGTCCTACACTTTTTGGTGTTAATATTGATTCATCTGGGCTTCTGCTTCCCTCTAATGTGCCCACTTATGCTTCTCCATCAATTGCTCCTGATTCAACCTCAATGCCACTGGGAGATTCTGGATTTCAGAATTCTTTGTACAATTGTGTTCAAGGCTCGTCCGAGTTATTGCACAGCTCGGGGCAAGTTGATCCGTCGAATCCAACTCAGACATTTGTGAAGGTTTACAAAACCGGGTCCATTGGGCGTTCGCTAGACATCTCCCGGTTCAGTAGCTATCAGGAGCTGCGAGAGGAGCTGGCTCAGATGTTTGGCATAGAGGGACAGTTGGAAGACCCTCGTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAACGATGCACTTCTCCTTGGAGACGACCCTTGGGAGGCATTTGTCAATAACGTTTGGTATATCAAGATACTTTCTCCTCAAGACGTTCAGGAACTAAGGGAACAGGTAATCGAGTCCTTCAACCCTATCGATGGTCAGCGACTAACCAGTGGTAGCAATGAAGCCGAAAATGTTTCGGGGCTACCGTCTGTTGGTTCGTTGGAATACTGA 2520 46.87 MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQVAATTNKEVDGHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTAQEQKDTFLPMELGIPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGKSPYVRNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKFSVSFSTVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGVSSVHDNRDDASNGLMWLRGGVGEQALHSLNLQSAGSLPWLQQRLDSSMFGNDHNQQYQAMLAAGMPNLGGVDMLRQQIMHLQQPFQYAQQAGLHNSLLQLQQHQLVQQSMSQNILQAPSQVMAENLPQHILQQTLQNQPEDLPNQQQHTYHDTVQVQSNQFHQGGHSNVPSPTFPRSNLVDSNSNYPESISSRRNIIASSCAEGTGNLSNIYRSGQSILTEQLPQQSPVSKNAHSPVDAHPNSMSFPFSGRDSILELGNCNSDSPSPTLFGVNIDSSGLLLPSNVPTYASPSIAPDSTSMPLGDSGFQNSLYNCVQGSSELLHSSGQVDPSNPTQTFVKVYKTGSIGRSLDISRFSSYQELREELAQMFGIEGQLEDPRRSGWQLVFVDRENDALLLGDDPWEAFVNNVWYIKILSPQDVQELREQVIESFNPIDGQRLTSGSNEAENVSGLPSVGSLEY 839
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16738823 16753434 - Cp4.1LG01g19620.1 Cpe01g01963 463276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01963 839 SUPERFAMILY DNA-binding pseudobarrel domain 124 245 IPR015300 -
Cpe01g01963 839 SUPERFAMILY CAD & PB1 domains 705 788 - -
Cpe01g01963 839 MobiDBLite consensus disorder prediction 540 567 - -
Cpe01g01963 839 CDD B3_DNA 139 204 IPR003340 GO:0003677
Cpe01g01963 839 SMART B3_2 140 218 IPR003340 GO:0003677
Cpe01g01963 839 ProSiteProfiles PB1 domain profile. 714 799 IPR000270 GO:0005515
Cpe01g01963 839 Gene3D - 280 361 - -
Cpe01g01963 839 MobiDBLite consensus disorder prediction 817 839 - -
Cpe01g01963 839 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 202 813 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cpe01g01963 839 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 13 200 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cpe01g01963 839 Pfam AUX/IAA family 711 799 IPR033389 -
Cpe01g01963 839 Pfam Auxin response factor 242 325 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cpe01g01963 839 Gene3D - 138 215 IPR015300 -
Cpe01g01963 839 Gene3D - 710 803 - -
Cpe01g01963 839 PANTHER AUXIN RESPONSE FACTOR 8 202 813 - -
Cpe01g01963 839 PANTHER AUXIN RESPONSE FACTOR 8 13 200 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01963 Cpe-Chr1:16738823 Cpe10g00065 Cpe-Chr10:472288 0 dispersed
Cpe20g00544 Cpe-Chr20:3180981 Cpe01g01963 Cpe-Chr1:16738823 1.23E-44 dispersed
Cpe01g01963 Cpe-Chr1:16738823 Cpe13g00526 Cpe-Chr13:5354326 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01963 - - csv:101208098 1501.49