Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01970 ATGAGGGTTAAGATTGCTTTGAATGAGAAGGGCGTGAGCTATGAGAGCAAAGAAGAGGACTTGTTTGGTTGGAAAGGTGGCAAAAGTGAGCTATTACTCAAATCTAACCCTATCCATAAGAAAGTCCCTGTTCTCTTGCATAATGGTAACCCACTTAATGAAAGCTCCAACATTGTCACCTATATTGACGAGACATGGCCTTCTTCTTCCCCTCTTCTTCCATCTTCCCCCTATGAAAGAGCTCGAGCTCGCTTCTGGATCGACTACATCGACAAAAAGGTTTTCGAGACGGGTGGCAAGATTTGGAGGAGTAATGGAGATGAACAAGAGGTAGCCAAGAAGGAGTTCATTGAGATTTTGAAGCAATTGGAGGAAGCTTTAGGGGATAATGATTTCTTTGGAGGAGAAAGGTTTGGGATTGTGGATGTGATTGCTATCCCTTTCAGTTGTTGGTTCTATGCTTTTGAGAAAGTTGGGGGCTTTAAAGTGGAAGAACATTGCCCAAAGCTATCAAATTGGGAGAAGAGGTGCTTGTTGAAGGAGAGTGTGGGTAGTGTCATTCCTAGCCCTGAGATGGTGTATGGGTTTGTGAGCTCCATGAGGAACAAGCTTGGGCTTGAATAG 624 44.07 MRVKIALNEKGVSYESKEEDLFGWKGGKSELLLKSNPIHKKVPVLLHNGNPLNESSNIVTYIDETWPSSSPLLPSSPYERARARFWIDYIDKKVFETGGKIWRSNGDEQEVAKKEFIEILKQLEEALGDNDFFGGERFGIVDVIAIPFSCWFYAFEKVGGFKVEEHCPKLSNWEKRCLLKESVGSVIPSPEMVYGFVSSMRNKLGLE 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16862570 16863270 - Cp4.1LG01g19720.1 Cpe01g01970 463283

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01970 207 Gene3D - 76 207 - -
Cpe01g01970 207 SUPERFAMILY GST C-terminal domain-like 64 203 IPR036282 -
Cpe01g01970 207 Pfam Glutathione S-transferase, N-terminal domain 1 64 IPR004045 -
Cpe01g01970 207 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 199 IPR045073 -
Cpe01g01970 207 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 76 196 IPR010987 -
Cpe01g01970 207 Gene3D Glutaredoxin 1 75 - -
Cpe01g01970 207 SFLD Main.3: Omega- and Tau-like 1 204 IPR045073 -
Cpe01g01970 207 Pfam Glutathione S-transferase, C-terminal domain 105 177 IPR004046 -
Cpe01g01970 207 SUPERFAMILY Thioredoxin-like 1 94 IPR036249 -
Cpe01g01970 207 PANTHER GLUTATHIONE S-TRANSFERASE, AMINO-TERMINAL DOMAIN PROTEIN 1 199 - -
Cpe01g01970 207 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 70 IPR004045 -
Cpe01g01970 207 CDD GST_C_Tau 78 197 IPR045074 GO:0004364|GO:0006749
Cpe01g01970 207 SFLD Glutathione Transferase (cytosolic) 1 204 IPR040079 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01970 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101213628 347.821
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01970 Cpe-Chr1:16862570 Cpe14g00390 Cpe-Chr14:2406631 1.96E-52 dispersed
Cpe01g01970 Cpe-Chr1:16862570 Cpe01g00578 Cpe-Chr1:3332404 4.94E-34 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe12g00950 . 1 209 Glutathione S-transferase Gene Family AT4G02520 59.9 2.0e-65 246.1
Cpe17g00797 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.1 1.1e-63 240.4
Cpe17g00796 . 5 210 Glutathione S-transferase Gene Family AT4G02520 56.9 9.4e-60 227.3
Cpe12g00950 . 1 210 Glutathione S-transferase Gene Family AT2G02930 61.0 6.1e-67 251.1
Cpe17g00797 . 1 210 Glutathione S-transferase Gene Family AT2G02930 58.2 3.7e-64 241.9
Cpe17g00796 . 5 211 Glutathione S-transferase Gene Family AT2G02930 57.6 7.2e-60 227.6
Cpe17g00797 . 5 206 Glutathione S-transferase Gene Family AT1G02950 54.7 2.1e-61 233.0
Cpe12g00950 . 3 206 Glutathione S-transferase Gene Family AT1G02950 55.1 1.6e-58 223.4
Cpe17g00796 . 6 207 Glutathione S-transferase Gene Family AT1G02950 54.2 1.8e-57 219.9
Cpe12g00950 . 1 210 Glutathione S-transferase Gene Family AT1G02930 59.5 2.5e-65 245.7
Cpe17g00797 . 1 210 Glutathione S-transferase Gene Family AT1G02930 57.1 3.6e-64 241.9
Cpe17g00796 . 5 211 Glutathione S-transferase Gene Family AT1G02930 55.6 1.6e-59 226.5
Cpe12g00950 . 1 210 Glutathione S-transferase Gene Family AT1G02920 61.0 1.0e-66 250.4
Cpe17g00797 . 1 210 Glutathione S-transferase Gene Family AT1G02920 57.1 9.6e-65 243.8
Cpe17g00796 . 5 211 Glutathione S-transferase Gene Family AT1G02920 57.0 6.4e-61 231.1
Cpe17g00797 . 1 214 Glutathione S-transferase Gene Family AT2G47730 56.7 6.8e-68 254.6
Cpe12g00950 . 1 214 Glutathione S-transferase Gene Family AT2G47730 57.7 7.0e-65 244.6
Cpe17g00796 . 4 214 Glutathione S-transferase Gene Family AT2G47730 55.2 6.2e-61 231.5
Cpe10g00926 . 3 210 Glutathione S-transferase Gene Family AT3G09270 54.1 5.4e-66 248.1
Cpe01g00281 . 675 885 Glutathione S-transferase Gene Family AT1G69930 50.5 7.4e-58 221.1
Cpe01g00281 . 675 882 Glutathione S-transferase Gene Family AT1G59670 52.1 2.0e-55 213.0
Cpe01g00281 . 675 882 Glutathione S-transferase Gene Family AT1G59700 54.0 3.9e-59 225.3
Cpe01g00281 . 675 889 Glutathione S-transferase Gene Family AT1G10370 60.8 4.7e-73 271.6
Cpe01g00281 . 675 889 Glutathione S-transferase Gene Family AT1G10360 58.1 9.1e-69 257.3
Cpe01g00578 . 438 653 Glutathione S-transferase Gene Family AT1G78380 64.4 1.3e-83 306.6
Cpe01g01970 . 1 204 Glutathione S-transferase Gene Family AT1G78380 54.4 2.0e-60 229.6
Cpe14g00390 . 1 173 Glutathione S-transferase Gene Family AT1G78380 53.3 1.1e-58 223.8
Cpe01g00578 . 444 652 Glutathione S-transferase Gene Family AT1G78370 60.8 1.1e-74 276.9
Cpe01g01970 . 1 201 Glutathione S-transferase Gene Family AT1G78370 52.2 4.8e-59 224.9
Cpe14g00390 . 1 173 Glutathione S-transferase Gene Family AT1G78370 52.3 3.4e-57 218.8
Cpe01g00578 . 438 651 Glutathione S-transferase Gene Family AT1G78340 60.3 6.7e-77 284.3
Cpe01g01970 . 1 201 Glutathione S-transferase Gene Family AT1G78340 50.7 1.0e-56 217.2
Cpe14g00390 . 1 173 Glutathione S-transferase Gene Family AT1G78340 51.4 2.7e-54 209.1
Cpe14g00390 . 1 178 Glutathione S-transferase Gene Family AT1G78320 51.8 1.7e-47 186.4
Cpe01g00578 . 438 655 Glutathione S-transferase Gene Family AT1G17180 62.8 2.4e-82 302.4
Cpe14g00390 . 1 178 Glutathione S-transferase Gene Family AT1G17180 55.7 1.3e-64 243.4
Cpe01g01970 . 1 207 Glutathione S-transferase Gene Family AT1G17180 54.1 5.5e-63 238.0
Cpe03g01662 . 1 156 Glutathione S-transferase Gene Family AT1G17180 52.2 3.0e-40 162.5
Cpe01g00578 . 440 653 Glutathione S-transferase Gene Family AT1G17190 55.6 1.6e-70 263.1
Cpe01g00578 . 440 657 Glutathione S-transferase Gene Family AT3G43800 55.4 6.3e-70 261.2
Cpe01g00578 . 441 655 Glutathione S-transferase Gene Family AT1G53680 56.7 1.7e-67 253.1
Cpe01g01970 . 1 207 Glutathione S-transferase Gene Family AT1G53680 55.5 9.9e-60 227.3
Cpe05g01048 . 52 222 Glutathione S-transferase Gene Family AT2G02390 67.3 3.1e-62 235.3
Cpe05g01046 . 51 221 Glutathione S-transferase Gene Family AT2G02390 65.5 1.0e-60 230.3
Cpe08g00486 . 79 242 Glutathione S-transferase Gene Family AT2G02390 52.7 7.7e-45 177.6
Cpe05g01046 . 10 220 Glutathione S-transferase Gene Family AT2G02380 62.6 7.0e-74 274.2
Cpe05g01048 . 11 220 Glutathione S-transferase Gene Family AT2G02380 62.4 7.8e-73 270.8
Cpe08g00486 . 36 241 Glutathione S-transferase Gene Family AT2G02380 53.6 6.4e-59 224.6
Cpe14g00502 . 1 237 Glutathione S-transferase Gene Family AT5G41210 69.2 2.2e-92 335.9
Cpe01g00659 . 1 179 Glutathione S-transferase Gene Family AT5G41210 68.2 3.5e-66 248.8
Cpe14g00502 . 1 237 Glutathione S-transferase Gene Family AT5G41240 67.5 9.2e-89 325.1
Cpe01g00659 . 1 179 Glutathione S-transferase Gene Family AT5G41240 65.9 2.5e-62 237.3
Cpe08g01131 . 10 236 Glutathione S-transferase Gene Family AT5G02780 68.9 4.8e-89 324.7
Cpe08g01131 . 5 237 Glutathione S-transferase Gene Family AT3G55040 60.9 4.3e-79 292.0
Cpe08g01131 . 10 236 Glutathione S-transferase Gene Family AT5G02790 69.6 2.5e-93 339.0
Cpe03g00710 . 66 273 Glutathione S-transferase Gene Family AT1G19570 61.2 3.0e-74 275.4
Cpe01g00205 . 303 476 Glutathione S-transferase Gene Family AT1G19570 73.1 3.1e-71 265.4
Cpe01g01113 . 1 182 Glutathione S-transferase Gene Family AT1G19570 58.0 4.8e-64 241.5
Cpe01g00205 . 303 478 Glutathione S-transferase Gene Family AT1G75270 75.7 1.4e-76 283.1
Cpe03g00710 . 66 273 Glutathione S-transferase Gene Family AT1G75270 63.6 1.4e-76 283.1
Cpe01g01113 . 1 183 Glutathione S-transferase Gene Family AT1G75270 62.4 1.0e-69 260.4
Cpe03g00710 . 55 275 Glutathione S-transferase Gene Family AT5G16710 76.9 6.0e-101 364.4
Cpe01g00205 . 304 477 Glutathione S-transferase Gene Family AT5G16710 62.1 6.5e-63 238.0
Cpe01g01113 . 3 181 Glutathione S-transferase Gene Family AT5G16710 52.9 4.1e-57 218.8
Cpe06g00604 CCT 1 267 Glutathione S-transferase Gene Family AT1G77290 68.9 5.8e-107 384.4
Cpe02g00572 CCT 1 270 Glutathione S-transferase Gene Family AT1G77290 67.0 3.2e-105 378.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014456 0 1 0 0 0 1 0 1 1 0 1 0 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 21
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01970 Cpe_Chr01 FPKM 2.8 2.547114 3.321509 4.709051 1.503065 1.590823 2.157415 0.222392 0.362128 0.610449