Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01971 ATGTCGCCATCTCTTCCAGTTCACTTCCTCTTCACAGTAGCTGTAGCTCTCACATCTCCAGTAGCCTCCCATTTCTCTTCTTCCACCTCCTCGCCGTTGCCGGAGTCAGCTCCGTCTCTCTCCGACTGGAGATCTGCTCGAGCCACCTACTACGCCGCCTCCGATCCTCGTGATGCGGTCGGCGGAGCATGTGGATATGGCGATTTGGTGAAGGCAGGTTATGGCATGGCGACGGTGGGTCTCAGTGAGGCGCTGTTCGAACGTGGCCAGATCTGTGGTGCCTGCTTTCAGCTCCGGTGCGTGGAGGACCTCCGGTGGTGTATTCCTGGCACTTCTATTATTGTCACTGTTACTAATTTCTGTGCACCTAATTATGGCTTCACGGCTGACGGTGGAGGCCGTTGTAATCCTCCTAATAAGCATTTTGTGCTCCCTATTGAAGCGTTTGAGAAGATCGCTATCTGGAAGGCGGGAAACATGCCTGTTCAGTATCGGAGAAACCTTAAGATGTATGATACTCATGTTGAAAGGCCTCTTGGTTTAGAGGCAGGGGTTCTTGTAATTTGGCCTAAGAGTAAGGCAACAAAGATAGAGAAGTTCTTTAGAATCTTTCTTTGTCGATGGATCGAACTGCAAAGGTAG 642 50.78 MSPSLPVHFLFTVAVALTSPVASHFSSSTSSPLPESAPSLSDWRSARATYYAASDPRDAVGGACGYGDLVKAGYGMATVGLSEALFERGQICGACFQLRCVEDLRWCIPGTSIIVTVTNFCAPNYGFTADGGGRCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRNLKMYDTHVERPLGLEAGVLVIWPKSKATKIEKFFRIFLCRWIELQR 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16866034 16867352 - Cp4.1LG01g19750.1 Cpe01g01971 463284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01971 213 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Cpe01g01971 213 PRINTS Expansin/Lol pI family signature 82 100 IPR007118 GO:0005576
Cpe01g01971 213 PRINTS Expansin/Lol pI family signature 42 57 IPR007118 GO:0005576
Cpe01g01971 213 PRINTS Expansin/Lol pI family signature 157 173 IPR007118 GO:0005576
Cpe01g01971 213 SMART dpbb_1 78 164 IPR007112 -
Cpe01g01971 213 PANTHER EXPANSIN-A15 24 166 IPR002963 GO:0009664
Cpe01g01971 213 PRINTS Expansin signature 73 87 IPR002963 GO:0009664
Cpe01g01971 213 PRINTS Expansin signature 149 162 IPR002963 GO:0009664
Cpe01g01971 213 PRINTS Expansin signature 132 149 IPR002963 GO:0009664
Cpe01g01971 213 PRINTS Expansin signature 100 111 IPR002963 GO:0009664
Cpe01g01971 213 PRINTS Expansin signature 113 123 IPR002963 GO:0009664
Cpe01g01971 213 SUPERFAMILY Barwin-like endoglucanases 42 166 IPR036908 -
Cpe01g01971 213 Gene3D - 28 167 IPR036908 -
Cpe01g01971 213 Pfam Lytic transglycolase 79 164 IPR009009 -
Cpe01g01971 213 PANTHER EXPANSIN-A13 24 166 - -
Cpe01g01971 213 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 61 166 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01971 Cpe-Chr1:16866034 Cpe16g00619 Cpe-Chr16:6736333 9.96E-45 dispersed
Cpe01g01971 Cpe-Chr1:16866034 Cpe13g00535 Cpe-Chr13:5442608 3.32E-113 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01971 - - csv:101206236 308.916