Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01974 ATGGTTCTTTCCAAGACTGCTTCTCAGTCGGATGTCTCCGTCCATTCCACGTTCGCTTCGCGATATGTGCGAACCTCTCTCCCGAGATTCAAAATGTCGGAAAATTCAATCCCTAAGGAAGCTGCGTTCCAGATCATCAATGATGAACTCATGCTCGATGGAAACCCTAGGCTGAATCTGGCCTCCTTCGTTACCACTTGGATGGAGCCTGAGTGCGATAAACTCATAATGGCCGCCATTAACAAGAATTACGTCGATATGGATGAATATCCTGTCACTACAGAGCTCCAGAATCGATGTGTGAACATGATAGCTCACTTGTTCAATGCCCCATTGGGGGAGAATGAGACGGCGGTGGGAGTTGGAACAGTGGGATCGTCGGAGGCCATAATGTTGGCTGGCTTGGCTTTCAAGAGAAAGTGGCAGAACAGAAGGAAGGCTGAAGGCAAACCCTATGACAACCCCAACATTGTCACCGGAGCTAATGTCCAGGTAGAACTGAAGGAGGTGAAATTGAGGGAAGGTTACTACGTGATGGATCCAGAGAAAGCTGTGGATTTGGTTGATGAGAACACCATCTGTGTAGCAGCCATCTTGGGCTCCACTCTCAATGGAGAATTCGAAGACGTGAAGGTCTTAAACGATCTCTTAATCGAGAAGAACAAGGAAACCGGATGGGAGACTCCTATTCATGTTGATGCTGCGAGTGGAGGGTTCATTGCCCCATTCATATACCCTGATCTAGAATGGGACTTTAGGCTGCCCCTTGTAAAGAGTATTAATGTGAGTGGCCATAAGTATGGGCTTGTTTATGCTGGAATTGGTTGGGTTATCTGGAGGAACAAGGAAGACTTGCCTGAAGAACTCATCTTCCATATCAACTATCTTGGCGCCGACCAACCCACTTTCACTCTCAATTTCTCCAAAGGTTCTAGCCAAGTCATTGCTCAGTATTACCAATTGATCCGCTTGGGACTGGAAAAAACAGGGCGGTTCAACATTGTGTCTAAGGACGAAGGAGTTCCACTAGTGGCATTCTCCTTGAAAGACAGCAGTCGTCACACAGAGTTTGAAGTCTCAGAAATGCTTAGGAGGTTCGGGTGGATCGTGCCAGCTTACACGATGCCTCCGGACGCGCAACACATTACAGTTCTGAGAGTGGTGATCCGAGAAGATTTCTCACGCACACTTGCTGAGCGTCTAGTGAAAGACATTGAAAAGGTGATGCACGAGCTGGACATCCTCCCGTCAAGGGCTGATATCAGAGAAGAGACAAACCACGTCGTGGTGGCGAAGAAGAGTGCACTGGAGACACAGAGGGAGATCACCACTGCTTGGAGGAAGTTTGTGATGGATAAGAAGAAGACTAATGGAGTCTGTTAA 1383 47.79 MVLSKTASQSDVSVHSTFASRYVRTSLPRFKMSENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGENETAVGVGTVGSSEAIMLAGLAFKRKWQNRRKAEGKPYDNPNIVTGANVQVELKEVKLREGYYVMDPEKAVDLVDENTICVAAILGSTLNGEFEDVKVLNDLLIEKNKETGWETPIHVDAASGGFIAPFIYPDLEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGLEKTGRFNIVSKDEGVPLVAFSLKDSSRHTEFEVSEMLRRFGWIVPAYTMPPDAQHITVLRVVIREDFSRTLAERLVKDIEKVMHELDILPSRADIREETNHVVVAKKSALETQREITTAWRKFVMDKKKTNGVC 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16888936 16892858 + Cp4.1LG01g19660.1 Cpe01g01974 463287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01974 460 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 327 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cpe01g01974 460 Gene3D - 332 416 - -
Cpe01g01974 460 PANTHER GLUTAMATE DECARBOXYLASE 325 460 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cpe01g01974 460 PANTHER GLUTAMATE DECARBOXYLASE 1 327 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cpe01g01974 460 Pfam Pyridoxal-dependent decarboxylase conserved domain 37 327 IPR002129 GO:0016830|GO:0019752|GO:0030170
Cpe01g01974 460 Gene3D - 1 65 - -
Cpe01g01974 460 PANTHER GLUTAMATE DECARBOXYLASE 325 460 - -
Cpe01g01974 460 PANTHER GLUTAMATE DECARBOXYLASE 1 327 - -
Cpe01g01974 460 Gene3D - 66 331 IPR015421 GO:0003824
Cpe01g01974 460 SUPERFAMILY PLP-dependent transferases 15 412 IPR015424 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01974 Cpe-Chr1:16888936 Cpe13g00440 Cpe-Chr13:4739919 0 dispersed
Cpe01g01974 Cpe-Chr1:16888936 Cpe13g00539 Cpe-Chr13:5469153 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01974 K01580 - csv:101216119 856.284