Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01976 ATGGCGCGCCGGAATTTGCTTCGGCTGTGTTTGTCATTTTCGGCGCTTGTTGTTTTGTTGTTCTTCCCTACAGGAGCGGCTGACCTTGCATCGGATATGGCGGCGCTGGCGACGCTTCAGAAAGCGATGGGCGCTCGGAGCCGGACTCGTCAATGGAACCTCTCCGATGAGACTCCGTGTTTGTGGTTTGGTGTTATTTGCGGCGGCGGGAGGGTTACTGAACTGCGGCTTCCCGGTGTTGGACTCTTTGGTCAACTTCCTCTAGGACTTGGAAATTTGACTCATCTGGAAACCCTATCTCTTCGTTCTAACATGCTTTCCGGTTCTATTCCGTCTGATTTTGCGAACCTTCGCTCTCTCCGGAACCTCTACTTGCAACGGAACTCGTTTTCCAGTGAGATTCCTTCTGTTCTCTTCAGTATACAGAGTCTGGTTCGATTGAATTTGGCGCATAACCAGTTCGTTGGTCCGATTTCATCTGTATTCAACAATCTTACGAACTTAGAGGTTCTGAATTTGGAAGGGAATCAACTCGATGGATTCATTCCTGATTTGAACATTCCCTCGCTCAAAACTCTCAACGTTTCTTTCAATCGTCTCAACGGCTCAATCCCTACGCGATTGTCCGATCAACCAGCCAGCGTCTTCGACGGAAACTCACTCTGCGGGAAGCCACTGAGTCCGTGCCAAGGCGAAGAGAAGAAATTATCCACCGCAGCAATCGTTGGTATCGTAATCGGAGGTTCAATTGCATTTTTTATCATCGGTCTGATTTTGATCTTTGTATGTCGTAAAAGGATCAGGATTAACCGGCGGAATGATGCTCAGATGACGACGAGGTCGGAGGTCAGGAATGGCGGTGGAGGAAATGGAGGAATTAGGAATCAGAATGGTTTGGTGTTCTGTGGGAAAGGAGAAAGGGTGTTTGATTTGGAGGAACTGTTGAAGGCTTCTGCAGAGGTATTGGGGAAGGGAGCTTTTGGGTCAACTTACAAGGCAGCTCTGGATATGGGGATGACCATGGCAGTGAAGAGATTGAGAGATGTCAAAGTTTCAGAGGAGGAATTCATGGAGAAGATTGAAAGCTTGGGGATGATGAATCATCAGAACTTAGTTCCCATTAATGCTTACTATTATGGCAGGGATGAGAAGCTTCTGGTTTGTGATTATGCCCCCATGGGAAGCTTATCCCTGCATTTACATGGCAACAAAGATTCTGGTAGGACTCCATTGAAATGGGAAGCAAGGGTTGGCATTATGCTCTCAGCTGGTCGTGGCATTTCGTATCTACATTCCCGACGACCTCCGACCTCCCACGGGAATATAAAGCCTTCAAACATTCTTCTCAACAGATCCCACACAGCTTGTGTCAACAAGAAGAAGACAGCAGAAGTGTTTGATGAGGAGCTGTTAGGAAACAAGAATGGGTCGGACGAAATGATTCAACTTCTGAATCTTGCCATGTTGTGTACAGATCCATACCCGGATAATCGCCCTTCAATGGCGAAGGTGACGAGTCGAATCGATGAAATATATCATTCGATCTTACTGAAAGAACAAGAGATGAGCAAGGATAAGTTTTATGATGTGGACAGTGCTGTTTCTCAGCAATTTTACTCGGCTGATTCAATCATGGTTCCACCTTCAATCTAG 1653 46.76 MARRNLLRLCLSFSALVVLLFFPTGAADLASDMAALATLQKAMGARSRTRQWNLSDETPCLWFGVICGGGRVTELRLPGVGLFGQLPLGLGNLTHLETLSLRSNMLSGSIPSDFANLRSLRNLYLQRNSFSSEIPSVLFSIQSLVRLNLAHNQFVGPISSVFNNLTNLEVLNLEGNQLDGFIPDLNIPSLKTLNVSFNRLNGSIPTRLSDQPASVFDGNSLCGKPLSPCQGEEKKLSTAAIVGIVIGGSIAFFIIGLILIFVCRKRIRINRRNDAQMTTRSEVRNGGGGNGGIRNQNGLVFCGKGERVFDLEELLKASAEVLGKGAFGSTYKAALDMGMTMAVKRLRDVKVSEEEFMEKIESLGMMNHQNLVPINAYYYGRDEKLLVCDYAPMGSLSLHLHGNKDSGRTPLKWEARVGIMLSAGRGISYLHSRRPPTSHGNIKPSNILLNRSHTACVNKKKTAEVFDEELLGNKNGSDEMIQLLNLAMLCTDPYPDNRPSMAKVTSRIDEIYHSILLKEQEMSKDKFYDVDSAVSQQFYSADSIMVPPSI 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16908045 16911053 + Cp4.1LG01g19780.1 Cpe01g01976 463289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01976 550 Pfam Leucine rich repeat 91 129 IPR001611 GO:0005515
Cpe01g01976 550 PANTHER OS05G0588300 PROTEIN 457 512 - -
Cpe01g01976 550 PANTHER OS05G0588300 PROTEIN 11 457 - -
Cpe01g01976 550 PANTHER LRR RECEPTOR-LIKE KINASE 457 512 - -
Cpe01g01976 550 PANTHER LRR RECEPTOR-LIKE KINASE 11 457 - -
Cpe01g01976 550 Pfam Leucine Rich Repeat 167 184 IPR001611 GO:0005515
Cpe01g01976 550 Gene3D Ribonuclease Inhibitor 32 138 IPR032675 -
Cpe01g01976 550 ProSitePatterns Protein kinases ATP-binding region signature. 322 344 IPR017441 GO:0005524
Cpe01g01976 550 Gene3D Phosphorylase Kinase; domain 1 294 390 - -
Cpe01g01976 550 SMART LRR_typ_2 165 186 IPR003591 -
Cpe01g01976 550 SMART LRR_typ_2 93 116 IPR003591 -
Cpe01g01976 550 SMART LRR_typ_2 117 141 IPR003591 -
Cpe01g01976 550 SMART LRR_typ_2 187 211 IPR003591 -
Cpe01g01976 550 Pfam Leucine rich repeat N-terminal domain 30 67 IPR013210 -
Cpe01g01976 550 Gene3D Ribonuclease Inhibitor 139 229 IPR032675 -
Cpe01g01976 550 ProSiteProfiles Protein kinase domain profile. 316 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g01976 550 Pfam Protein kinase domain 320 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g01976 550 Gene3D Transferase(Phosphotransferase) domain 1 392 455 - -
Cpe01g01976 550 Gene3D Transferase(Phosphotransferase) domain 1 456 536 - -
Cpe01g01976 550 SUPERFAMILY Protein kinase-like (PK-like) 320 504 IPR011009 -
Cpe01g01976 550 SUPERFAMILY L domain-like 47 210 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01976 Cpe-Chr1:16908045 Cpe09g01107 Cpe-Chr9:9549259 1.12E-141 dispersed
Cpe03g00717 Cpe-Chr3:4356939 Cpe01g01976 Cpe-Chr1:16908045 3.56E-173 transposed
Cpe01g01976 Cpe-Chr1:16908045 Cpe13g00542 Cpe-Chr13:5489423 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62169 PF00069 Pkinase 1.60E-16 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01976 - - mcha:111012024 647.891