Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02014 ATGGAGAACGCCGACGTATTTTTAGGTCTGCATGACTTTCTTGAGCGTATGCGTCAACCATCAGCCTCAGATTTCGTCAAATCCATTAAAAGCTTTATTGTGTCATTTTCGAATAATGCTCCTGACCCTGAAAGGGATAGTGCCTCTGTACAAGAATTCTTTGCCAAAATGGAGGGAGCTTTCAGAGCTCATCCACTTTGGTCTGGTTGCTCAGAAGAAGAGCTGGAAAGTGCTGGTGAGGGATTGGAGAAGTATGTCATGACCAAGTTATATTCTCGTGTATATGCTTCGCTTGCAGATGATGTAAAAATTGACGAACAACTTTCTGATAAGATGGCATTGATTCAACAGTTCATTCGGCCAGAAAATCTGGATATCAAACCAAATTTCCAGAACGAGTCATCATGGTTGCTTGCTCAGAAGGAACTCTTGAAGATTAACATGTACAAAGCTCCAAGAGACAAGCTTGTGTGTCTCCTTGGCTGTTGTAAGGTCATCAGTAACCTGCTACTTAATGCTTCTATTGCTTCAAATGAGAATCCTCCAGGGGCTGATGAGTTCCTTCCCGTCCTTATTTATGTTATCATAAAGGCAAACCCTCCACAACTGCACTCAAATTTATTATATATACAACGGTACAGGGGACAATCCCGATTAACTGGAGAAGCAGCATATTTTTTCACAAACATACTCTCAGCCGAGTCCTTTATCTCAAACATTGACGCAAATGCCCTCTCAATGGAAGAAACCGAGTTTGAAAAAAACATGGAATCTGCTCGAGCACTGCTATCTGGGCTATCCACTGATGTTGAATCTTCTTCTAATAAAAGTAACTTGGATGAACGAGTTGCCCGTAATTCAGAACTTGTTGAAACCAGTTCTCAAGCTTCAAATTCTGGTACAGAACCTGCAGTTAGACCCAACTCCCCAGAATCAAAGTCAAGCACTGAGGGACCACATGTCAAATACCAGTCAACAGTGATGGAAGTTTCAACGCTCTCAGATTTGGAGAACAAGGGTGCAGCTATGCTTTTAAATGATCACACAAGGAAGCAAGCCTTCCGAGATTATCCATATTTGTTTGCCCAAGTTGGGGATCTTACATTTAATGACGTAGAAGAGCTACTCAATCAATACCAACATCTAGTTTTCAAGTATGTTTCCCTTTCTAAAGGACTGAGTCTCAGATCTTCATCCCCATCTTCGTCAAATTCTGAAATGCATTCCCACCACAATCCTGAATCTTTCAAAGAACCTGAAGATGTTAGAGACGTAACATCAAATGATGAGTCTGCTGGAGAGACACATACTATGATTGATGGCCCAGATGGAACCTCACCGTTTGGAGAAGAAAACGTTGGATCAGGGTTAATGCAAGACAAGGTAGTACTACCTCAGCATGAAGGAAACGACACGACATCCCTATCCTAG 1431 41.86 MENADVFLGLHDFLERMRQPSASDFVKSIKSFIVSFSNNAPDPERDSASVQEFFAKMEGAFRAHPLWSGCSEEELESAGEGLEKYVMTKLYSRVYASLADDVKIDEQLSDKMALIQQFIRPENLDIKPNFQNESSWLLAQKELLKINMYKAPRDKLVCLLGCCKVISNLLLNASIASNENPPGADEFLPVLIYVIIKANPPQLHSNLLYIQRYRGQSRLTGEAAYFFTNILSAESFISNIDANALSMEETEFEKNMESARALLSGLSTDVESSSNKSNLDERVARNSELVETSSQASNSGTEPAVRPNSPESKSSTEGPHVKYQSTVMEVSTLSDLENKGAAMLLNDHTRKQAFRDYPYLFAQVGDLTFNDVEELLNQYQHLVFKYVSLSKGLSLRSSSPSSSNSEMHSHHNPESFKEPEDVRDVTSNDESAGETHTMIDGPDGTSPFGEENVGSGLMQDKVVLPQHEGNDTTSLS 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17151608 17156456 + Cp4.1LG01g20050.1 Cpe01g02014 463327

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02014 476 Pfam Domain of unknown function (DUF5601) 27 91 IPR041545 -
Cpe01g02014 476 SUPERFAMILY VPS9 domain 11 257 IPR037191 -
Cpe01g02014 476 MobiDBLite consensus disorder prediction 395 409 - -
Cpe01g02014 476 Gene3D VPS9 domain 98 265 IPR037191 -
Cpe01g02014 476 PANTHER BNAC09G47180D PROTEIN 1 411 - -
Cpe01g02014 476 Pfam Vacuolar sorting protein 9 (VPS9) domain 138 241 IPR003123 -
Cpe01g02014 476 MobiDBLite consensus disorder prediction 395 476 - -
Cpe01g02014 476 Gene3D - 17 97 - -
Cpe01g02014 476 MobiDBLite consensus disorder prediction 288 322 - -
Cpe01g02014 476 ProSiteProfiles VPS9 domain profile. 102 246 IPR003123 -
Cpe01g02014 476 PANTHER RAB GDP/GTP EXCHANGE FACTOR 1 411 IPR045046 GO:0005085|GO:0016192
Cpe01g02014 476 MobiDBLite consensus disorder prediction 267 322 - -
Cpe01g02014 476 MobiDBLite consensus disorder prediction 410 430 - -
Cpe01g02014 476 SMART vps9_2 135 255 IPR003123 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02014 K20131 RABGEF1; Rab5 GDP/GTP exchange factor - csv:101211579 758.829
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02014 Cpe-Chr1:17151608 Cpe13g00583 Cpe-Chr13:5713752 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g334 . . . . . . . . Cmo04g02424 Cmo15g00739 . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1256 Cone20ag0471 . . . . Blo17g00201 . . Bda13g01504 . Bpe14g00360 . Bma02g00245 . . . . . Car04g02239 Car15g00666 Cpe01g02014 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006627 1 4 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g02014 Cpe_Chr01 FPKM 0.943115 1.542048 3.173177 2.724041 2.235428 1.807029 2.58815 2.207494 2.186223 2.366614