Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02018 ATGGCAGTAGACCGATGTCACCTGGGAAAGAAGATGATGGGTAGGGGTGCGGATGGAGGCTGTGGTGCTGAGGAGAAGTCTTGCCCAGTGGCAAGAGTGCCGAACAGAGTAACGTTGACCCATACTCAAACACATGAGGAGAAGTTGTCTACTGTGGACATTGATTATTACTCTCAGGCTCAAAAGGCGTTGTGCGAGCGTTCGCCATTTGATGTAGCGGAGGAGACTGCAGCTCCTTATGTGCCCACTCTGCCCAGTAGGTTGGGTAGCTTTTTGAGCAGACATACGGGTGGTAAGAAGCGGCAGAGGAAATCCGATTCTGGGGCAGACAAGAAGTCTTCGAGGCAAGGTGAAAGGTCTCGTGGCTCCAACATTTGGGTTGAGACAGAGGAATATTTTAGAGACTTGACGCTGTCTGATGTAGATACTTTGCGTGCAGCGTCTTCTTTTAGTGGTTTAGTGTTTAGGAAATGTTTTTCAATTCCGTCTTCTGGAAATGACTCAGAAGCAAATGTAGTTGGCAGTGATAATGTTAGTGATGAGATTACGGATGGGGCTATTGTTAAAGACGAGGTTGAGGATGACCGTTTGGGCTCGGATGTGAGCATGGTTGAAGCCAGTGGTTCTCCTCTTGGAGACAAGGGTTGTTCGAACTTGGATTCGTCTCCCGGCTTAGAATGGATATTGGGTTGTAGGAATAAGGTGTCCTTAACTTCGGAGCGGCCTTCGAAGAAACGGAAGCTTCTAGGTGGTGATGCAGGATTGGAAAAAGTTCTGATTGTTTCTCCTTGCGATGGAAATTCATCTTTATGCCACTTTTGCTCTAAGGGAGATACGTACAAAGGGGTAAATCCGTTAGTTACTTGCAGTTGTTGTTATGCGGTGGTTCACTATAAGTGCTATGGTATAAGAGAGAAAGTCAATGGATCCTGGTCGTGTTCTTGGTGTAAGAAGAAGGATAAAACCAATGATTCCACAAAGCCCTGTTTGCTCTGTCCCAAGCAGGGTGGTGCTCTGAAGCCTGTACATAAGAACGTCGACAGTGGATTTTCTGTTGAGTTTGCTCATTTATTTTGTAGTCAGTGGATGCCAGAGGTATTCATAGAGGACTTGACGCAGATGGAGCCTGTTATGAATTTGGGAGGTGTAAAAGAAACCCGGAAAAAGTTAGTATGTAACATATGCAAAGTCAAGTATGGAGCCTGTCTCCGGTGCAGCCATGGAACTTGCAGAACATCCTTTCATCCAATTTGTGCAAGGGAGGCTAGGAATAGAATGGAGGTCTGGGCAAAATATGGGTGTGATAATGTGGAGCTTCGTGCTTTCTGTTCAAAGCATTCAGAAAGTCAATATTGTAGGAGCAGTGGCCGATTTCAAGTCCCTTCTGAAGCTGTTAACAGTGGCTCACATGTGGTCAACCACCTTCCAATGACATTATCAGTTAACAGACCACAAAAATTAGTTGGGAGAAGGAACATTGATAACCTTTTACTCTGTAAGGATGCTTCTGATTCCAACCCTGGAAAATTGGACGATGGCAAATTAGAAGATAAAGGATCCGCTTATCCCAGTTTAAATGCTGATTCTGATTGTGTAGATACACATAAATGTACTGTCCAGGGGGTTGAGGATTTGATCGACCAAGGAAAAGTGAATGTTAAAGATGTAGCATCAGAAATCAACATACACCCTGATTTATTATGTGCAAAACTTACTGCTGAAAACCTTGTCCCTGACCTGAAAGTCAAAATTGTCCGATGGCTAAGAAATCATGCTTATATTGGCACCTTGCAGAAAAATTTGAGAGTCAAACTCAAATCGGCTGCTTTACCCAAAGCTGTTGTTGGAGCTGCTAATTGTTCCAACTCTTCATCAGTTCCTGATTCTGATGATTCAAATCTTGTTACTGATAAGATGGTTATACCTCAAAGAAAAGCTAAAAACACTATAAGCCTTTTGAAGAATGATGAAATCAAGTCTTCATCTGAAGAAATTGTTGGTGGCCATGGTCTAGCGGTGCAAAGTGGTATCTTGGACCAGAAAGCTTGTGAAGAACAAGCTGATTCAAATAAAGAATGCATCCAAGACACTGGAGAGAAGCCTTTAAATGAGCATGACAGTTCTCAAGATTCCCCTTCAAGGAATTTTCCAAATTATGTAGAGGGTGATCATTTGGAGGCTCCCATTTCTGGTCATTATTCTTCAATAAGTGCAGTTCATGGAAAGGCTAGCGAGTCCCCTGATTCCTATTGTCATCCATATGTCCAAGAGAAGATGGCACATATGTTGGATGGAAAGCTTCTTGATGTGCTTGAAGGAGAGATGTCTCGTTGGCAAGCATCTTCCAATGTAAGCGTTTGCTGTGATCACCAACACCAGTATCTCGAGTGCAATGATGTGAGTTGCAAATCTGGTGGATTTAATCGGACGCAGCAAATGAATAAAAAAATAAGTGGAATCATAAAGTTATCTCCAGAAGATGAAATTGAAGGAGAAATTATATTTTATCAGCATAGATTACTTGCAAATGCAGTTTCAAGAAAGCGGTTCACTGATCATTTAATTTGTAATGTTGTTAAGAGTCTTCCTAAGGAGATTGATGAAGCAAGAAGTACGAGATGGGATGCCGTTCTTATTAATCAGTATTTTAGTGAGCTCAGAGAAGCCAAGAAACAGGGTAAGAAAGAGAGAAGACACAAGGAAGCACAGGCTGTACTAGCTGCTGCAACTGCTGCTGCGGCCGCCTCTTCTAGGATGTCATCTTTCAGAAAAGATGTATATGAAGAATCTACTCATAGAGAGTTGATGCCTCGTGCAAAAGAAACTCTTACAAAAGTTGCTCTCCCAAAGGCTTCATTAGAGTCTGATTTCTGTAAAGAACATGTGAGATCCTGTGACATCTGCAGGCGGCAAGAGACAATATTAAAGCCAATTTTAGTCTGCTCCAGCTGCAAGGTTGCTGTACATCTGGATTGCTATCGTACTGTTAAAGCGTCCTCAGGTCCATGGTGCTGCGAATTATGTGAAGAATTGTCACTATCAAGAGGGTCTGGAGTGCCAGCTGTCAATCTTGTGGAGAAGTCATATTTTGTTGCAGAATGTGGTCTATGTGGTGGCACCACAGGTGCATTCAGGAAATCATCAGATGGCCAGTGGGTCCATGCTTTCTGTGCAGAGTGGGTCTTTGAATCAACTTTCAAAAGAGGACAAGCAAATCCTGTGGGAGGAATGTGCAATTATGGTCATTGTCAGTCCGCTTTTCATCCCTCATGCGCTAGAAATGCTGGATGTTACATGACTGTAAAGACTTCTGGTGGTAAATTGCAGCACAGGGCATATTGTGAAAAACATAGCACAGAGCAGACAGCAAAGGCTGAGAACAAAACACATGGAATCGAGGAATTGAATAGAGTCAAGCAAATTAGGGTTGAACTTGAGAGATTACGTCTACTCTGCGAGAGAATCATCAAGCGTGAGAAGATCAAGAGGGACCTAGTTCTTTGTTCGCATGATGTTCTTGCTTTTAAAAGAGACCATGTAGCACGATCCGTACTAGTTCAGACTCCTTTCTTCCTACCAGAAGTTAGCTCTGAATCAGCTACCACATCATTAAAGGGGCACGTTGAGGATTTGAAATCGTGCAGTGAAGCTGTGCAGAGATCAGATGATTTAACCGTGGACAGCACAGTTTTCAGCAAGCACTGGAACAAAGTACCAATGTCTTTGGACACTGAGCAAAAGACTGACGACGACAGTTCTACATCTCAGAACCCATTCCCCCAAAAATTTGCAGACAGGGGTCAGTTTGCCGGGAAGCAAATACCGCAGAGATCTTTGACTACCACATCATCACGTAATCTTGTAGATGTTGGAGGATTGAAGTTTAAGTCAAGAAAGCATGCTGAGACGTTTCAGAAAGAACTGGTAATGACATCCGACCAAGCATCAATGAAGAACTCTCTTTTACCTAAGCAGTACCTGTATGTTCCTGCTGATGTCCTTGCCAAGGAGAAGCAGGTCAACCAGGAAACAGGTTCTGCCGAGACACCGAAATGTGAGAGCCGTTGTGAACGCGAAAGAGTTGGGGAGGGAAAACAAAAAGAAGCTGCTGTGAAGCTACCTTTGTAA 4128 43.31 MAVDRCHLGKKMMGRGADGGCGAEEKSCPVARVPNRVTLTHTQTHEEKLSTVDIDYYSQAQKALCERSPFDVAEETAAPYVPTLPSRLGSFLSRHTGGKKRQRKSDSGADKKSSRQGERSRGSNIWVETEEYFRDLTLSDVDTLRAASSFSGLVFRKCFSIPSSGNDSEANVVGSDNVSDEITDGAIVKDEVEDDRLGSDVSMVEASGSPLGDKGCSNLDSSPGLEWILGCRNKVSLTSERPSKKRKLLGGDAGLEKVLIVSPCDGNSSLCHFCSKGDTYKGVNPLVTCSCCYAVVHYKCYGIREKVNGSWSCSWCKKKDKTNDSTKPCLLCPKQGGALKPVHKNVDSGFSVEFAHLFCSQWMPEVFIEDLTQMEPVMNLGGVKETRKKLVCNICKVKYGACLRCSHGTCRTSFHPICAREARNRMEVWAKYGCDNVELRAFCSKHSESQYCRSSGRFQVPSEAVNSGSHVVNHLPMTLSVNRPQKLVGRRNIDNLLLCKDASDSNPGKLDDGKLEDKGSAYPSLNADSDCVDTHKCTVQGVEDLIDQGKVNVKDVASEINIHPDLLCAKLTAENLVPDLKVKIVRWLRNHAYIGTLQKNLRVKLKSAALPKAVVGAANCSNSSSVPDSDDSNLVTDKMVIPQRKAKNTISLLKNDEIKSSSEEIVGGHGLAVQSGILDQKACEEQADSNKECIQDTGEKPLNEHDSSQDSPSRNFPNYVEGDHLEAPISGHYSSISAVHGKASESPDSYCHPYVQEKMAHMLDGKLLDVLEGEMSRWQASSNVSVCCDHQHQYLECNDVSCKSGGFNRTQQMNKKISGIIKLSPEDEIEGEIIFYQHRLLANAVSRKRFTDHLICNVVKSLPKEIDEARSTRWDAVLINQYFSELREAKKQGKKERRHKEAQAVLAAATAAAAASSRMSSFRKDVYEESTHRELMPRAKETLTKVALPKASLESDFCKEHVRSCDICRRQETILKPILVCSSCKVAVHLDCYRTVKASSGPWCCELCEELSLSRGSGVPAVNLVEKSYFVAECGLCGGTTGAFRKSSDGQWVHAFCAEWVFESTFKRGQANPVGGMCNYGHCQSAFHPSCARNAGCYMTVKTSGGKLQHRAYCEKHSTEQTAKAENKTHGIEELNRVKQIRVELERLRLLCERIIKREKIKRDLVLCSHDVLAFKRDHVARSVLVQTPFFLPEVSSESATTSLKGHVEDLKSCSEAVQRSDDLTVDSTVFSKHWNKVPMSLDTEQKTDDDSSTSQNPFPQKFADRGQFAGKQIPQRSLTTTSSRNLVDVGGLKFKSRKHAETFQKELVMTSDQASMKNSLLPKQYLYVPADVLAKEKQVNQETGSAETPKCESRCERERVGEGKQKEAAVKLPL 1375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17174767 17193976 - Cp4.1LG01g20170.1 Cpe01g02018 463331

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02018 1375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 449 IPR013083 -
Cpe01g02018 1375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1074 1120 IPR013083 -
Cpe01g02018 1375 MobiDBLite consensus disorder prediction 688 724 - -
Cpe01g02018 1375 MobiDBLite consensus disorder prediction 688 707 - -
Cpe01g02018 1375 CDD PHD_SF 964 1008 - -
Cpe01g02018 1375 SUPERFAMILY FYVE/PHD zinc finger 261 319 IPR011011 -
Cpe01g02018 1375 ProSiteProfiles Zinc finger PHD-type profile. 268 319 IPR019787 -
Cpe01g02018 1375 SMART PHD_3 270 317 IPR001965 -
Cpe01g02018 1375 SMART PHD_3 964 1009 IPR001965 -
Cpe01g02018 1375 SMART PHD_3 391 447 IPR001965 -
Cpe01g02018 1375 SMART PHD_3 1033 1118 IPR001965 -
Cpe01g02018 1375 CDD ePHD 1034 1117 - -
Cpe01g02018 1375 ProSiteProfiles Zinc finger PHD-type profile. 962 1011 IPR019787 -
Cpe01g02018 1375 ProSiteProfiles Extended PHD (ePHD) domain profile. 326 447 IPR034732 -
Cpe01g02018 1375 Coils Coil 1138 1158 - -
Cpe01g02018 1375 MobiDBLite consensus disorder prediction 1350 1367 - -
Cpe01g02018 1375 PANTHER PHD FINGER PROTEINS 811 1343 - -
Cpe01g02018 1375 PANTHER PHD FINGER PROTEINS 220 454 - -
Cpe01g02018 1375 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 811 1343 - -
Cpe01g02018 1375 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 220 454 - -
Cpe01g02018 1375 Pfam PHD-zinc-finger like domain 328 446 - -
Cpe01g02018 1375 Pfam PHD-finger 977 1009 - -
Cpe01g02018 1375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 944 1015 IPR013083 -
Cpe01g02018 1375 MobiDBLite consensus disorder prediction 102 118 - -
Cpe01g02018 1375 ProSitePatterns Zinc finger PHD-type signature. 965 1008 IPR019786 -
Cpe01g02018 1375 ProSitePatterns Zinc finger PHD-type signature. 271 316 IPR019786 -
Cpe01g02018 1375 SUPERFAMILY FYVE/PHD zinc finger 955 1009 IPR011011 -
Cpe01g02018 1375 MobiDBLite consensus disorder prediction 1339 1375 - -
Cpe01g02018 1375 MobiDBLite consensus disorder prediction 1241 1283 - -
Cpe01g02018 1375 MobiDBLite consensus disorder prediction 88 123 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02018 - - - csv:101212864 2210.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02018 Cpe-Chr1:17174767 Cpe17g01004 Cpe-Chr17:7601005 1.25E-08 dispersed
Cpe01g02018 Cpe-Chr1:17174767 Cpe13g00585 Cpe-Chr13:5723550 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g332 . . . . . . . . Cmo04g02429 . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1260 Cone20ag0468 . . . . Blo17g00200 . . Bda13g01503 . Bpe14g00362 . Bma02g00243 . . . . . Car04g02243 Car15g00662 Cpe01g02018 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003906 1 3 1 1 1 2 2 2 1 1 1 1 2 1 1 2 2 2 2 2 1 1 1 2 2 2 1 1 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g02018 Cpe_Chr01 FPKM 2.513605 2.777784 2.432194 2.532603 2.411674 1.154356 2.83681 6.814904 6.878829 7.592874