Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe01g02021 | ATGCATCGTCTGCCTGAGTTTTTCTCTCCTGGGAAACGAAAAAAAGCTATGGATTCGAGAAAAAACGCCGGTAAACCCAAGCTTGGCCGACTTAATGCGGCGAAGAACATCGATTATGACGCTCCTTCCTCGTCTTCTTCGCTCGAAGATTCTTCTGGATCTCTTTACACTCGGTCCATGGACACGCCGGATGCCTCCAGCTTTCGGATTAATGGGATCGACGGTGAAATTGATTTCATCTGTCGGACTTTAGGGCTAAACGGTCCTGAAGACTTTGGGATTCCGATGGAGGCTTGGGAGGCCAGAAAGCTTCGTTCATCTTCCGAGCTTCTACTGAAGTCGAGATTGCATACTATTGATAGCCCGAAGAGCGAGGAAGTTAGTATGGAGAAGGAAGATAAAGAAATCGAAGATGAATTGTGCCTTAGGGTTAAGGATTCAGTTCGAATTAGCGTTGAGCAATCGACGGCTAAGACCGAATCTCTCGAGTGGAATGAAAGCCGTATGGCTACTACTGTTGAATGTAGCCCGAGAAGTGGAATCAATGGTGCTCGGCCTCCCTTACTCAAGCCGCCGCCGCCTATGGATGTCGATAATACTTGGGACATTTTGAAAACCTTTGCTCCTTTAGTTGACGAAGAAAATCGCGATGAAGTTCAAAAAGGAATCGAACCTTTTGTCGAAGGAGAAGGAGAGGGAAATATTGTCGGGCCTGTGGAGAATTCACCGCTCGTTCGGTCTTGGTGTTCTTTCACAACCTCGAATGATGATGACTGTTCGAGCTGCACTACAGAGCCTGCAAATATTTCACCCAATATGAGATGCAAACCCGTCATCACGACTTGGGTAAAAGGAAAACGTCTAGGGAGCGGTTCATTTGGATCTGTGTATGAAGCAATGTCACAGAGTGGGGCCTTCTTTGCAGTCAAGGAAGTATCACTGCTCGATGAAGATAGTCAGGGAAGACAAAGTATCTATCAACTTCAGCAGGAGATAGCTCTTCTAAGTGAGTTCGAGCACGAGAACATAGTTCAGTACTATGGCACCGACACGGAGCCGGATGGGTCAAAACTCTATATCTTCCTTGAGCTTGTATCTCAGGGCTCCCTTATGAGCCTATATCAGAGGGTTGTCCTTACGGATTCCATTGTTTCTGCCTATACAAGGCAGATTCTGTGTGGTTTAAAGTATCTTCATGAGCAAAATGTGGTTCACAGGGATATTAAATGTGCCAATATATTGGTGGATGTGAGTGGATCTGTGAAGCTTGCAGATTTTGGTTTGGCGAAGGCAACAAAATTGAACGACGTTAAATCTTGTAAGGGAACTCCGTTCTGGATGGCACCTGAGGTGGTTAATAGGAAGGGCCAGGGCTACGGTCTTCCAGCTGATATCTGGAGCCTTGGGTGCACAGTATTGGAAATGTTAACCCAGAAGCTTCCATACTCGGAATTCGAAAATCATATGCAGGCCCTATATCAGATTGGAAAAGGCAAACTACCGGCGATTCCCGACTCTCTCTCAGACGATGGGCGGGATTTCGTTCTGCAGTGCCTTAAAGTTAATCCAAACGATCGTCTTACTGCAGCTGATCTTTTAAATCACCCGTTTGTTAAAAGACCAGCTTCCAGTTCATCAGGGTCAGCATCTCCTTACTACAGGCCAGGCAGAAGAATTTGA | 1680 | 46.25 | MHRLPEFFSPGKRKKAMDSRKNAGKPKLGRLNAAKNIDYDAPSSSSSLEDSSGSLYTRSMDTPDASSFRINGIDGEIDFICRTLGLNGPEDFGIPMEAWEARKLRSSSELLLKSRLHTIDSPKSEEVSMEKEDKEIEDELCLRVKDSVRISVEQSTAKTESLEWNESRMATTVECSPRSGINGARPPLLKPPPPMDVDNTWDILKTFAPLVDEENRDEVQKGIEPFVEGEGEGNIVGPVENSPLVRSWCSFTTSNDDDCSSCTTEPANISPNMRCKPVITTWVKGKRLGSGSFGSVYEAMSQSGAFFAVKEVSLLDEDSQGRQSIYQLQQEIALLSEFEHENIVQYYGTDTEPDGSKLYIFLELVSQGSLMSLYQRVVLTDSIVSAYTRQILCGLKYLHEQNVVHRDIKCANILVDVSGSVKLADFGLAKATKLNDVKSCKGTPFWMAPEVVNRKGQGYGLPADIWSLGCTVLEMLTQKLPYSEFENHMQALYQIGKGKLPAIPDSLSDDGRDFVLQCLKVNPNDRLTAADLLNHPFVKRPASSSSGSASPYYRPGRRI | 559 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 17213329 | 17218668 | + | Cp4.1LG01g20200.1 | Cpe01g02021 | 463334 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe01g02021 | 559 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 403 | 415 | IPR008271 | GO:0004672|GO:0006468 | |
Cpe01g02021 | 559 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cpe01g02021 | 559 | MobiDBLite | consensus disorder prediction | 168 | 194 | - | - | |
Cpe01g02021 | 559 | PANTHER | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED | 178 | 550 | - | - | |
Cpe01g02021 | 559 | PANTHER | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED | 19 | 163 | - | - | |
Cpe01g02021 | 559 | Pfam | Protein kinase domain | 283 | 538 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cpe01g02021 | 559 | Gene3D | Transferase(Phosphotransferase) domain 1 | 281 | 551 | - | - | |
Cpe01g02021 | 559 | MobiDBLite | consensus disorder prediction | 38 | 61 | - | - | |
Cpe01g02021 | 559 | SUPERFAMILY | Protein kinase-like (PK-like) | 281 | 541 | IPR011009 | - | |
Cpe01g02021 | 559 | PANTHER | SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED | 19 | 163 | - | - | |
Cpe01g02021 | 559 | PANTHER | SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED | 178 | 550 | - | - | |
Cpe01g02021 | 559 | ProSiteProfiles | Protein kinase domain profile. | 282 | 538 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cpe01g02021 | 559 | SMART | serkin_6 | 282 | 538 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cpe01g02021 | 559 | MobiDBLite | consensus disorder prediction | 1 | 61 | - | - | |
Cpe01g02021 | 559 | ProSitePatterns | Protein kinases ATP-binding region signature. | 288 | 310 | IPR017441 | GO:0005524 | |
Cpe01g02021 | 559 | MobiDBLite | consensus disorder prediction | 540 | 559 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g02021 | Cpe-Chr1:17213329 | Cpe05g00647 | Cpe-Chr5:3949716 | 4.65E-83 | dispersed | |
Cpe01g02021 | Cpe-Chr1:17213329 | Cpe01g02029 | Cpe-Chr1:17271978 | 5.43E-23 | proximal | |
Cpe04g01090 | Cpe-Chr4:9489949 | Cpe01g02021 | Cpe-Chr1:17213329 | 1.56E-07 | transposed | |
Cpe01g02021 | Cpe-Chr1:17213329 | Cpe13g00588 | Cpe-Chr13:5763777 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
62172 | PF00069 | Pkinase | 6.50E-68 | CL0016 | Cpe | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe01g02021 | K13414 | - | csv:101218538 | 850.506 |