Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02021 ATGCATCGTCTGCCTGAGTTTTTCTCTCCTGGGAAACGAAAAAAAGCTATGGATTCGAGAAAAAACGCCGGTAAACCCAAGCTTGGCCGACTTAATGCGGCGAAGAACATCGATTATGACGCTCCTTCCTCGTCTTCTTCGCTCGAAGATTCTTCTGGATCTCTTTACACTCGGTCCATGGACACGCCGGATGCCTCCAGCTTTCGGATTAATGGGATCGACGGTGAAATTGATTTCATCTGTCGGACTTTAGGGCTAAACGGTCCTGAAGACTTTGGGATTCCGATGGAGGCTTGGGAGGCCAGAAAGCTTCGTTCATCTTCCGAGCTTCTACTGAAGTCGAGATTGCATACTATTGATAGCCCGAAGAGCGAGGAAGTTAGTATGGAGAAGGAAGATAAAGAAATCGAAGATGAATTGTGCCTTAGGGTTAAGGATTCAGTTCGAATTAGCGTTGAGCAATCGACGGCTAAGACCGAATCTCTCGAGTGGAATGAAAGCCGTATGGCTACTACTGTTGAATGTAGCCCGAGAAGTGGAATCAATGGTGCTCGGCCTCCCTTACTCAAGCCGCCGCCGCCTATGGATGTCGATAATACTTGGGACATTTTGAAAACCTTTGCTCCTTTAGTTGACGAAGAAAATCGCGATGAAGTTCAAAAAGGAATCGAACCTTTTGTCGAAGGAGAAGGAGAGGGAAATATTGTCGGGCCTGTGGAGAATTCACCGCTCGTTCGGTCTTGGTGTTCTTTCACAACCTCGAATGATGATGACTGTTCGAGCTGCACTACAGAGCCTGCAAATATTTCACCCAATATGAGATGCAAACCCGTCATCACGACTTGGGTAAAAGGAAAACGTCTAGGGAGCGGTTCATTTGGATCTGTGTATGAAGCAATGTCACAGAGTGGGGCCTTCTTTGCAGTCAAGGAAGTATCACTGCTCGATGAAGATAGTCAGGGAAGACAAAGTATCTATCAACTTCAGCAGGAGATAGCTCTTCTAAGTGAGTTCGAGCACGAGAACATAGTTCAGTACTATGGCACCGACACGGAGCCGGATGGGTCAAAACTCTATATCTTCCTTGAGCTTGTATCTCAGGGCTCCCTTATGAGCCTATATCAGAGGGTTGTCCTTACGGATTCCATTGTTTCTGCCTATACAAGGCAGATTCTGTGTGGTTTAAAGTATCTTCATGAGCAAAATGTGGTTCACAGGGATATTAAATGTGCCAATATATTGGTGGATGTGAGTGGATCTGTGAAGCTTGCAGATTTTGGTTTGGCGAAGGCAACAAAATTGAACGACGTTAAATCTTGTAAGGGAACTCCGTTCTGGATGGCACCTGAGGTGGTTAATAGGAAGGGCCAGGGCTACGGTCTTCCAGCTGATATCTGGAGCCTTGGGTGCACAGTATTGGAAATGTTAACCCAGAAGCTTCCATACTCGGAATTCGAAAATCATATGCAGGCCCTATATCAGATTGGAAAAGGCAAACTACCGGCGATTCCCGACTCTCTCTCAGACGATGGGCGGGATTTCGTTCTGCAGTGCCTTAAAGTTAATCCAAACGATCGTCTTACTGCAGCTGATCTTTTAAATCACCCGTTTGTTAAAAGACCAGCTTCCAGTTCATCAGGGTCAGCATCTCCTTACTACAGGCCAGGCAGAAGAATTTGA 1680 46.25 MHRLPEFFSPGKRKKAMDSRKNAGKPKLGRLNAAKNIDYDAPSSSSSLEDSSGSLYTRSMDTPDASSFRINGIDGEIDFICRTLGLNGPEDFGIPMEAWEARKLRSSSELLLKSRLHTIDSPKSEEVSMEKEDKEIEDELCLRVKDSVRISVEQSTAKTESLEWNESRMATTVECSPRSGINGARPPLLKPPPPMDVDNTWDILKTFAPLVDEENRDEVQKGIEPFVEGEGEGNIVGPVENSPLVRSWCSFTTSNDDDCSSCTTEPANISPNMRCKPVITTWVKGKRLGSGSFGSVYEAMSQSGAFFAVKEVSLLDEDSQGRQSIYQLQQEIALLSEFEHENIVQYYGTDTEPDGSKLYIFLELVSQGSLMSLYQRVVLTDSIVSAYTRQILCGLKYLHEQNVVHRDIKCANILVDVSGSVKLADFGLAKATKLNDVKSCKGTPFWMAPEVVNRKGQGYGLPADIWSLGCTVLEMLTQKLPYSEFENHMQALYQIGKGKLPAIPDSLSDDGRDFVLQCLKVNPNDRLTAADLLNHPFVKRPASSSSGSASPYYRPGRRI 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17213329 17218668 + Cp4.1LG01g20200.1 Cpe01g02021 463334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02021 559 ProSitePatterns Serine/Threonine protein kinases active-site signature. 403 415 IPR008271 GO:0004672|GO:0006468
Cpe01g02021 559 MobiDBLite consensus disorder prediction 1 25 - -
Cpe01g02021 559 MobiDBLite consensus disorder prediction 168 194 - -
Cpe01g02021 559 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 178 550 - -
Cpe01g02021 559 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 19 163 - -
Cpe01g02021 559 Pfam Protein kinase domain 283 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g02021 559 Gene3D Transferase(Phosphotransferase) domain 1 281 551 - -
Cpe01g02021 559 MobiDBLite consensus disorder prediction 38 61 - -
Cpe01g02021 559 SUPERFAMILY Protein kinase-like (PK-like) 281 541 IPR011009 -
Cpe01g02021 559 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 19 163 - -
Cpe01g02021 559 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 178 550 - -
Cpe01g02021 559 ProSiteProfiles Protein kinase domain profile. 282 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g02021 559 SMART serkin_6 282 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g02021 559 MobiDBLite consensus disorder prediction 1 61 - -
Cpe01g02021 559 ProSitePatterns Protein kinases ATP-binding region signature. 288 310 IPR017441 GO:0005524
Cpe01g02021 559 MobiDBLite consensus disorder prediction 540 559 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02021 Cpe-Chr1:17213329 Cpe05g00647 Cpe-Chr5:3949716 4.65E-83 dispersed
Cpe01g02021 Cpe-Chr1:17213329 Cpe01g02029 Cpe-Chr1:17271978 5.43E-23 proximal
Cpe04g01090 Cpe-Chr4:9489949 Cpe01g02021 Cpe-Chr1:17213329 1.56E-07 transposed
Cpe01g02021 Cpe-Chr1:17213329 Cpe13g00588 Cpe-Chr13:5763777 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62172 PF00069 Pkinase 6.50E-68 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02021 K13414 - csv:101218538 850.506