Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02022 ATGCAAAGCAACTCTGATTCTAGGCGTTCTAGGGGAAACTCATATGTGTTGCCATCTAGTCCATTGAAAGTTGCTAAAAATGTTTTCCTCAAGAAGAGAAACTGCAAAGGGTCAGAGAAAAAAGAGTGGGAGGATGCTACCTGCTCGGTCTGTATGGAGTACCCTCACAATGCCGTGCTTCTTCTTTGTTCATCATATGATAAGGGTTGCCGGCCTTATATGTGTGCAACTGGTCGTCGATATTCCAATTGTCTTGATCAATATAAGAAAGCCTACACAAAAGTAACATCAACTCAAAGTTCAGAACAATTGAATATGCCGGTGGAAAGTTTAAGCTTGAATTTGGATGCAGGGCAGCCAAGTGAAAAGGTTGATGTGCCAGAGCTGTTGTGTCCCCTTTGTAGGGGACAGGTTAAAGGATGGACAGTGGTGGAACCAGCACGGAAGTATCTTAATTCTAAGAAGAGAAGCTGCATGCAGGATAATTGCTCATTTATTGGATGTTACAAGGAGCTGAAGAAGCACGTTAAGGCAAAGCATCCATTAGCTCGACCACGAGAAGTGGACCCTGTGCGTGAAGAAAAGTGGAAGAGATTTGAGCACGAGAGGGAGCGAAGTGATGTGATTAGCACGATCATATCATCCATCCCTGGAGCTATTGTTCTGGGGGATTACGTGTTGGAACCAAACCGAAGTGGTTTTTACAGTGAGTACGATTCTGATATGGATGAGAATTTGGATGATGATTCTTTCTTTTCCATGGATGCATTTGGTTTTGGACGGGACAGTGGTCTGTTTTCTCGTAATTCATACCGTAGGGGAGATGAGATTGATTTCGGGATGCACCGTGCTGCTGCAGGTCTGGGATCTACTGCTACTGGTGGACCAGGACGTGGTTTCCGTAGAATTATATTTGGGAGGTCGAGGCGGCCAAGACAGAGGGGAGGACTTAACAGAATTCCA 963 44.96 MQSNSDSRRSRGNSYVLPSSPLKVAKNVFLKKRNCKGSEKKEWEDATCSVCMEYPHNAVLLLCSSYDKGCRPYMCATGRRYSNCLDQYKKAYTKVTSTQSSEQLNMPVESLSLNLDAGQPSEKVDVPELLCPLCRGQVKGWTVVEPARKYLNSKKRSCMQDNCSFIGCYKELKKHVKAKHPLARPREVDPVREEKWKRFEHERERSDVISTIISSIPGAIVLGDYVLEPNRSGFYSEYDSDMDENLDDDSFFSMDAFGFGRDSGLFSRNSYRRGDEIDFGMHRAAAGLGSTATGGPGRGFRRIIFGRSRRPRQRGGLNRIP 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17219910 17223680 + Cp4.1LG01g20240.1 Cpe01g02022 463335

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02022 321 Pfam Protein of unknown function (DUF1644) 44 210 IPR012866 -
Cpe01g02022 321 PANTHER BNAC03G28140D PROTEIN 3 313 - -
Cpe01g02022 321 PANTHER OS01G0612600 PROTEIN 3 313 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02022 - - - csv:101213823 544.658
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02022 Cpe-Chr1:17219910 Cpe15g00327 Cpe-Chr15:4380935 1.01E-90 dispersed
Cpe04g00200 Cpe-Chr4:2033490 Cpe01g02022 Cpe-Chr1:17219910 4.38E-101 transposed
Cpe01g02022 Cpe-Chr1:17219910 Cpe13g00589 Cpe-Chr13:5769809 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g327 . . . . . . . . Cmo04g02438 Cmo15g00731 . . . . . . . . . . . . . . . . . . . . . Cone4ag1373 Cone7ag1558 . . . . . . Blo17g00196 Blo18g00198 . Bda13g01501 Bpe02g01620 Bpe14g00365 Bma01g00840 Bma02g00240 . . . . . Car04g02250 Car15g00658 Cpe01g02022 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004734 1 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 1 3 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g02022 Cpe_Chr01 FPKM 38.570824 37.558468 36.446678 31.854546 56.276482 51.144585 69.346344 43.847649 53.775726 58.865513