Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02024 AATTCCCCTCACTCACCTCCCCTATATAACCCCACCCTCTCCTCTCTTCTTTTCTCAAACCAATCTCCCATGGCGGCTAACGGTTCCGTCAAGGTACAATGGGAAGAGGAAGGCGAGGATGAGATCAACGACTTTCGTGATTTGATCCAGAAAGGAATCCGTGAATTAGAGCCGTCGATTCTCGACCCCAGACATGAAGGAACGGCTGATGATTGGATCGAGCGGAATTCTTCCATGGTCCGTCACACAGGAAAGCACCCTTTCAACTCGGAGCCGCCAATCAACCGTTTAACGCACTACGGCTTCATCACTCCGGTCCCACTCCACTTTGTTCGCAGCCGTGGCGCGGTCCCTAATGCTACGTGGAACGACTGGACCGTTGAAGTATGTGGGCTCGTCAAACGGCCCACTAAGTTCACCATGGACCAATTGATTAACGAGTTTGGGTTCCGGGAGTTTCCGGCGACGATTGTCTGCGCCGGCAACAGGCGGAAGGAGCAGAACACGGTGAAACAGACAATTGGGTTTAATTGGGGAGCGGCGGTGGTTGCCACGTCGGTCTGGGGAGGGGTCCCACTTCGTGACGTGTTGAACCGATGTGGAATTTTTAGCCGGAAGAATGGGGCGGTGAATGTTTGCTTTGAAGGGGCGGAGGACTTGCCGGGAGGCGGTGGGTGTAAGTACGGGACGAGTATAAAAGTGGAGTTCGCTATGGATCCGGCGAGGGATATAATTTTGGCGTATAGGCAAAACGGGGAGGAATTGGCGGCGGACCATGGTTTTCCGGTGAGGATGATAATGCCGGGATTCATCGGAGGTAAAATGGTGAAGTGGCTGAAACGGATCATTGTGACGACGAAAGAATCGGAAAGTTATTATCATTTAATGGACAACAAAGTTTTTCCATCCCACGTGGACGCTGAGCTGGCCGACAAAGAAGGGTGGTGGTATAAGTCGGAGTATGTAATCAACGAGTATAACATTAACTCGGTCATAACCACGCCCAGCCACAACGAAATTCTGCCCATCTGCACCACTCAGTCATCCTACATCTTGAGAGGCTATGCTTATTCCGGTGGTGGAAAGAAGGTTACGCGTGTGGAGGTGACAATGAACGGCGGAGAGACATGGGACATGTGCATGTTGGATCATCCAGCCAAGCCGAACAAGTTTGGAAAGTACTGGTGCTGGTGTCTATGGTCGTTGGAGGTGGAGGTTTCGAAGTTGCTTAATGCCAAGGAGATTGCCACCGGAATCATCTTCGAACACCCGACAATCCCCGGCAACCAGTCCGGCGGATGGATGAAGAACAGCGCCTCCACTCCCTCCACGAACAGCGCCTCCACCACCTCCACCACCTACTCCTTATCCGAAGTCAAAAAACACAACACGCATCAGTCCGCCTGGATTATCGTCCACGGCCACGTCTACGACTGTACCCAATTCATCAAACACCACCCCGGCGGCGCCGATAGCATCCTCAGCCACGCTGGCACCGACTGCACCGAAGTATTCGACGCCATCCACTCCGGCAAAGCCAAGAAAATGCTCGAAAATTACCGAATCGGAGATGTTCGTGGTGAATGCGAATCGGACGGTGGAGGATGTCTTGCTGAGGGAGAAGATGGACACGTGGACGGTCAAGAAGGAGAGATTGAAAGTTCTGTACGTGAGAGTAGGGTGGGAATACAGCGTTGTGCTTGTCACGGAGAGTATTCTCAGAGACCATATTCCGGCGCCGGCGGAGCATACTTTGGGCCGCCGGCGATGGTTCAGCTGGCAGTGCAGCCCAATTTGGAGAAGATGAATAACGACACCAAAAACTAG 1827 52.71 NSPHSPPLYNPTLSSLLFSNQSPMAANGSVKVQWEEEGEDEINDFRDLIQKGIRELEPSILDPRHEGTADDWIERNSSMVRHTGKHPFNSEPPINRLTHYGFITPVPLHFVRSRGAVPNATWNDWTVEVCGLVKRPTKFTMDQLINEFGFREFPATIVCAGNRRKEQNTVKQTIGFNWGAAVVATSVWGGVPLRDVLNRCGIFSRKNGAVNVCFEGAEDLPGGGGCKYGTSIKVEFAMDPARDIILAYRQNGEELAADHGFPVRMIMPGFIGGKMVKWLKRIIVTTKESESYYHLMDNKVFPSHVDAELADKEGWWYKSEYVINEYNINSVITTPSHNEILPICTTQSSYILRGYAYSGGGKKVTRVEVTMNGGETWDMCMLDHPAKPNKFGKYWCWCLWSLEVEVSKLLNAKEIATGIIFEHPTIPGNQSGGWMKNSASTPSTNSASTTSTTYSLSEVKKHNTHQSAWIIVHGHVYDCTQFIKHHPGGADSILSHAGTDCTEVFDAIHSGKAKKMLENYRIGDVRGECESDGGGCLAEGEDGHVDGQEGEIESSVRESRVGIQRCACHGEYSQRPYSGAGGAYFGPPAMVQLAVQPNLEKMNNDTKN 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17228582 17230921 + Cp4.1LG01g20220.1 Cpe01g02024 463337

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02024 608 PANTHER NITRATE REDUCTASE 417 533 - -
Cpe01g02024 608 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 449 528 IPR036400 -
Cpe01g02024 608 Pfam Mo-co oxidoreductase dimerisation domain 321 416 IPR005066 GO:0016491|GO:0030151
Cpe01g02024 608 SUPERFAMILY E set domains 325 412 IPR014756 -
Cpe01g02024 608 MobiDBLite consensus disorder prediction 431 450 - -
Cpe01g02024 608 PANTHER NADH-CYTOCHROME B5 REDUCTASE 417 533 IPR001834 GO:0016491
Cpe01g02024 608 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 63 323 IPR036374 -
Cpe01g02024 608 Pfam Oxidoreductase molybdopterin binding domain 115 293 IPR000572 -
Cpe01g02024 608 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 482 489 IPR018506 GO:0020037
Cpe01g02024 608 SMART Cyt_b5_2 454 526 IPR001199 -
Cpe01g02024 608 PRINTS Cytochrome B5 signature 513 525 IPR001199 -
Cpe01g02024 608 PRINTS Cytochrome B5 signature 501 508 IPR001199 -
Cpe01g02024 608 PRINTS Cytochrome B5 signature 476 486 IPR001199 -
Cpe01g02024 608 PRINTS Cytochrome B5 signature 486 500 IPR001199 -
Cpe01g02024 608 Gene3D - 84 324 IPR036374 -
Cpe01g02024 608 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 131 166 IPR022407 GO:0043546
Cpe01g02024 608 Gene3D - 325 418 - -
Cpe01g02024 608 Pfam Cytochrome b5-like Heme/Steroid binding domain 455 525 IPR001199 -
Cpe01g02024 608 PANTHER NADH-CYTOCHROME B5 REDUCTASE 41 416 IPR001834 GO:0016491
Cpe01g02024 608 PANTHER NITRATE REDUCTASE 586 608 - -
Cpe01g02024 608 PANTHER NITRATE REDUCTASE 41 416 - -
Cpe01g02024 608 PRINTS Eukaryotic molybdopterin domain signature 352 366 IPR008335 GO:0016491
Cpe01g02024 608 PRINTS Eukaryotic molybdopterin domain signature 181 196 IPR008335 GO:0016491
Cpe01g02024 608 PRINTS Eukaryotic molybdopterin domain signature 80 94 IPR008335 GO:0016491
Cpe01g02024 608 PRINTS Eukaryotic molybdopterin domain signature 256 269 IPR008335 GO:0016491
Cpe01g02024 608 PRINTS Eukaryotic molybdopterin domain signature 323 335 IPR008335 GO:0016491
Cpe01g02024 608 PRINTS Eukaryotic molybdopterin domain signature 272 285 IPR008335 GO:0016491
Cpe01g02024 608 PRINTS Eukaryotic molybdopterin domain signature 166 178 IPR008335 GO:0016491
Cpe01g02024 608 PRINTS Eukaryotic molybdopterin domain signature 393 403 IPR008335 GO:0016491
Cpe01g02024 608 PRINTS Eukaryotic molybdopterin domain signature 366 378 IPR008335 GO:0016491
Cpe01g02024 608 PRINTS Eukaryotic molybdopterin domain signature 102 118 IPR008335 GO:0016491
Cpe01g02024 608 PRINTS Eukaryotic molybdopterin domain signature 155 166 IPR008335 GO:0016491
Cpe01g02024 608 PRINTS Eukaryotic molybdopterin domain signature 239 255 IPR008335 GO:0016491
Cpe01g02024 608 PANTHER NADH-CYTOCHROME B5 REDUCTASE 586 608 IPR001834 GO:0016491
Cpe01g02024 608 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 451 526 IPR001199 -
Cpe01g02024 608 Gene3D - 444 529 IPR036400 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02024 K10534 NR; nitrate reductase (NAD(P)H) [EC:1.7.1.1 1.7.1.2 1.7.1.3] - csv:101219000 795.423
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g02024 Cpe06g00519 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02024 Cpe-Chr1:17228582 Cpe06g00519 Cpe-Chr6:3100083 1.70E-125 dispersed
Cpe01g02024 Cpe-Chr1:17228582 Cpe13g00590 Cpe-Chr13:5782089 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g325 . . . . . . . . Cmo04g02441 Cmo15g00727 . Cma09g00664 . . . Cpe06g00519 . . . . . . . . . . . . . . . . . . Cone20ag0466 Lsi04g02366 Csa04g01830 . . Blo17g00195 Blo18g00197 . Bda13g01500 Bpe02g01621 Bpe14g00366 Bma01g00839 Bma02g00239 Sed04g0506 . Cmo09g00648 . . Car04g02252 Car09g00590 Cpe01g02024 . Bhi09g02640 Tan01g3984 Cmetu09g0993 . Hepe01g2257 Mch11g0805 . Cla11g01515 Cam11g1575 Cec11g1604 Cco11g1602 Clacu11g1730 Cmu11g1548 Cre11g1965 . . Chy07g00682 Cme07g00892
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000829 1 3 2 3 2 2 4 3 3 3 3 3 4 2 3 6 3 1 4 3 5 4 3 3 3 4 3 3 3 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g02024 Cpe_Chr01 FPKM 15.574561 17.434874 21.474134 17.463175 8.260381 11.50423 8.579818 14.024533 14.848264 13.341645