Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02027 ATGCATTCTTTCTGCTGTGTCTCTACTGTCTCTGATAACTCTTCGTCCAAGAAACCGCCGTATCCGATGCCCGACCTTCATATTCCACCGGCTTCTCCTGCGGTTTCTGTCGCTTCCAGATCGGATCCGACGATTCGGATTTCTCATAATCGGAGTCTTAGTAGTAGCGATGCGGGACGGCTTAGCCACCGGAGTATTTTTGCTGCTGAGATGGTTGCACGGCATTCCTCCTTTAGGGAGCCTCCGGTTGACGTTAAGATCAACGATATTGTTGGGAATGGTATTTGTGGTATACTCTATAAGTGGGTGAACTACGGGAAAGGTTGGCGTCCACGCTGGTTTGTGCTTCAGGATGGCGTTTTGTCCTACTATAAGATTCATGGACCTGATAAGATCGTTGTCAATGAGGAAACAGAGAAGGGATCGAAGGTGATTGGCGAGGTGTCAATGAGGAGGATTGCGAGACATAAGAATGGGTTCTCTAATCATACCACCCAGTTCCCACTCAGGCGCAAGCCGTTTGGGGAAGTTCATCTCAAGGTTTCCTCAATTCGAGAAAGCCGATCAGATGATAAGAGGTTTTCCATCTTCACTGGGACAAAGAGACTTCACTTGCGTGCGGAGACCTGCGACGATCGGTTGGCATGGATGGATGCATTGCAGGCAGTGAAGGAACTATTCCCAAGGATGTCGAACAGCGAGCTCATGGCGCCTAAGGACTTCTTGTCTGTGTCAACAGACAGGATTAGAAAGCGGCTTTTAGAAGAGGGTGTCAATGAAACAGCTATTCAGGACACTGAAAACATTATGAAGAGTGAGTTTGCTGCATTGCAAAACCAGCTCTTGTTGCTCAAGCAGAAGCAGTGGCAACTTATTGACACACTGCGGCACTTAGAGACAGAAAAGGTTGACTTGGAGAATACAGTAGTTGATGAGAGCCAGAGACAGTTCAATGAGCCAGGGGCTTTGCCTGGTCCGCTGGAAAAGTACAGTGATGCAAGTGCAAGTGTAACTGAATCTGATGATGACAATGAGCGAGTTGATGCTGCAGAGGAAGAAACAGATGATGATGAGAACACTTTTTTTGATACGAGAGATTTTTTATCGTCAAGTTCGTTCAAAAGCAATGGATCTGTCAGGATATCATCTTTTTCTTCGGATGAAGGCACTCATGCAGTTGGTTCTGAGGAAGAGGTGGATCCATCAATTAGGTCTGTTGGAACTAATTATCCACATGTTAAGCGGCGCAAGAAATTACCTGATCCAGTTGAAAAGGAGAAGGGTGTTAGCCTTTGGTCAATGATTAAAGATAACATTGGAAAAGATCTCACCAAAATTTGTCTCCCTGTTTTCTTCAATGAGCCTCTTTCTTCCTTGCAAAAGTGTTTTGAAGATTTAGAATATTCTTACCTTATTGATCGGGCACATGAGTGGGGAAGAAGGGGTGATAGCCTCATGAGGATTCTTAACGTAGCTGCATTTGCTGTATCTGGATATGCTTCAACAGAAGGAAGAATTTGCAAGCCATTTAATCCACTGTTAGGGGAAACTTATGAGGCTGACTATCCTGATAAAGGTCTCAAGTTTTTCTCCGAGAAGGTTAGCCATCATCCAGTGGTAGTTGCATGCCATTGCGAGGGTAAAGGGTGGAGATTTTGGGGGGACAGCAATTTGAAGAGCAAATTTTGGGGTCGATCAATTCAGCTTGATCCTGTTGGTCAGTTAACTTTAGAATTTGATGATGGAGAAGTCTATCAGTGGAGTAAGGTGACGACGTCAATTTACAATCTAATACTGGGGAAGCTGTACTGCGATCATTATGGTACAATGCGTATAGATGGAAATCGTGAATACTCGTGCAAGCTAAAATTCAAGGAGCAGTCCATTATTGACAGGAATCCACACCAGGTTCAGGGTGTAGTTCAAGATAGAAATGGAAAAACGGTGGCTACATTATTTGGAAAATGGGATGAGAGTATGCATTATGTCAATGGGGACTGTTCTCGGAAGGGAAAAGGATTTGATTCATCTGAACCCCACCAACTCTGGAAACGAAACAAGCCACCTAAATTTTCTACTAGATATAACTTCACGCCTTTTGCTATGACTTTGAATGAACTGACACCAGGCTTGAAGGAAAAGTTGCCTCCTACAGATTCAAGGCTCAGACCTGATCAGAGGTTTTTGGAAAACGGAGAGTACGAAATGGCTAACTCGGAAAAGTTGCGATTGGAGCAGCGCCAACGACAGGCACGGAAGATGCAAGAGAGAGGTTGGAAACCAAGGTGGTTTGCCAAGGATAAGGGAACCGATACATATCGCTACATTGGCGGGTACTGGGAGGCCAGAGACAATAGCAAATGGGACTCATGCCCTGATATATTCGGTCAGATTCCTATTGATCCACAACTCGACTGA 2418 44.87 MHSFCCVSTVSDNSSSKKPPYPMPDLHIPPASPAVSVASRSDPTIRISHNRSLSSSDAGRLSHRSIFAAEMVARHSSFREPPVDVKINDIVGNGICGILYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIVVNEETEKGSKVIGEVSMRRIARHKNGFSNHTTQFPLRRKPFGEVHLKVSSIRESRSDDKRFSIFTGTKRLHLRAETCDDRLAWMDALQAVKELFPRMSNSELMAPKDFLSVSTDRIRKRLLEEGVNETAIQDTENIMKSEFAALQNQLLLLKQKQWQLIDTLRHLETEKVDLENTVVDESQRQFNEPGALPGPLEKYSDASASVTESDDDNERVDAAEEETDDDENTFFDTRDFLSSSSFKSNGSVRISSFSSDEGTHAVGSEEEVDPSIRSVGTNYPHVKRRKKLPDPVEKEKGVSLWSMIKDNIGKDLTKICLPVFFNEPLSSLQKCFEDLEYSYLIDRAHEWGRRGDSLMRILNVAAFAVSGYASTEGRICKPFNPLLGETYEADYPDKGLKFFSEKVSHHPVVVACHCEGKGWRFWGDSNLKSKFWGRSIQLDPVGQLTLEFDDGEVYQWSKVTTSIYNLILGKLYCDHYGTMRIDGNREYSCKLKFKEQSIIDRNPHQVQGVVQDRNGKTVATLFGKWDESMHYVNGDCSRKGKGFDSSEPHQLWKRNKPPKFSTRYNFTPFAMTLNELTPGLKEKLPPTDSRLRPDQRFLENGEYEMANSEKLRLEQRQRQARKMQERGWKPRWFAKDKGTDTYRYIGGYWEARDNSKWDSCPDIFGQIPIDPQLD 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17251190 17259160 - Cp4.1LG01g20280.1 Cpe01g02027 463340

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02027 805 MobiDBLite consensus disorder prediction 1 25 - -
Cpe01g02027 805 Coils Coil 734 757 - -
Cpe01g02027 805 Coils Coil 295 315 - -
Cpe01g02027 805 MobiDBLite consensus disorder prediction 311 421 - -
Cpe01g02027 805 Gene3D - 93 227 IPR011993 -
Cpe01g02027 805 Pfam Pleckstrin homology domain 96 221 - -
Cpe01g02027 805 MobiDBLite consensus disorder prediction 1 18 - -
Cpe01g02027 805 Gene3D - 726 789 - -
Cpe01g02027 805 SMART PH_update 93 227 IPR001849 -
Cpe01g02027 805 CDD PH_ORP_plant 95 232 - -
Cpe01g02027 805 MobiDBLite consensus disorder prediction 364 390 - -
Cpe01g02027 805 ProSiteProfiles PH domain profile. 92 225 IPR001849 -
Cpe01g02027 805 PANTHER OSBP(OXYSTEROL-BINDING PROTEIN)-RELATED PROTEIN 1C 4 799 - -
Cpe01g02027 805 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 4 799 IPR000648 GO:0008289
Cpe01g02027 805 Gene3D - 516 688 - -
Cpe01g02027 805 Pfam Oxysterol-binding protein 430 783 IPR000648 GO:0008289
Cpe01g02027 805 SUPERFAMILY PH domain-like 95 230 - -
Cpe01g02027 805 MobiDBLite consensus disorder prediction 344 360 - -
Cpe01g02027 805 SUPERFAMILY Oxysterol-binding protein-like 425 797 IPR037239 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02027 K20456 OSBP; oxysterol-binding protein 1 - csv:101214552 1451.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01580 Cpe-Chr1:9654994 Cpe01g02027 Cpe-Chr1:17251190 0 dispersed
Cpe01g02027 Cpe-Chr1:17251190 Cpe14g00881 Cpe-Chr14:7292929 0 dispersed
Cpe01g02027 Cpe-Chr1:17251190 Cpe13g00595 Cpe-Chr13:5826537 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g320 . . . . . . . . Cmo04g02445 Cmo15g00720 . . . . . . . . . . . . . . . . . . . . . Cone4ag1377 Cone7ag1554 Cone17ag1264 Cone20ag0464 . . . . Blo17g00190 Blo18g00195 . Bda13g01496 Bpe02g01623 Bpe14g00370 Bma01g00837 Bma02g00235 . . . . . Car04g02258 Car15g00652 Cpe01g02027 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004129 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 3 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g02027 Cpe_Chr01 FPKM 19.644392 21.856833 14.046039 15.215918 14.695362 12.34166 14.083666 18.547789 17.22007 19.333788