Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02028 ATGTTCTTAACTAACCCACTTCGCTGTTTCAGCTGGCGAGGCTCCCGCTGCTTTCATTCCATCATAAACTCTCCCTCTTTTAGGTCTCCGATCAATACAACTGCTTCAGCGCCCACCCCAGGGACTTCCAGTAAAGTGAGTGAAAAAGGGAGATTGTTCTCTCTATTATCTGGTTTAGCAATGGAGACTAGTTCAACTTGTTCGTTGGTTTTGAGTGGAAAAACAGAGGCTGAGAATGAAACTGCCAAATTGCTGAAGAGGAATGACACTTTAAAGCTCCCAGACGATATCGAAATTTCGATTTCTTTGCACTCAGAAAGGGATAAATCTTTGAAGGAAAGTGGTTTTCAGATTGGTTCATATATGAATTCTCTTTCTACTGATACTTTTGGTAGATTCCTCATTTGGTGTTCACGGATTCCTTCAACTCAGGATGTAATTTCTCAGAACTTCAGCGATCTCCCATTGGGAGCTGTCTGTGTGGCTGATGTTCAGTTCAAGGGAAGGGGTCGATCAAAGAATTTGTGGGAATCTCCCCCTGGTTGCCTAATGTTTTCCTTTACCATTCAAATGGAAGATGGCCGTATAGTTCCTCTACTACAGTATGTAGTATCTCTAGCTATTACTGAGGCTGTAAAAGATATTTGCGACAAAAAGGGTTTACCTTACATTGACTTGAAAATAAAATGGCCAAATGATCTTTATGTGAATGGCCTGAAAGTTGGAGGCATTCTGTGCACATCAACATATAGATCAAAGAAGTTCAACGTTACTGCTGGGTTTCAGGCTCTTGAGGAACTCTACTGTCAGACATGGTTGCACAGTGGGCAAAGAGTTATTGTACAGGAAAAGAAAGAAGATCAAGTAGTGGAAAATGTAGTCACTATTCAGGGGTTGACACCTACAGGATATTTGCTAGCTATTGGAGATGACAACCAAATGTGCGAGCTCCATCCCGATGGAAATAGCTTAGATTTCTTCAAAGGACTGATAAAGAGCAAACTGGTGTGA 1011 41.54 MFLTNPLRCFSWRGSRCFHSIINSPSFRSPINTTASAPTPGTSSKVSEKGRLFSLLSGLAMETSSTCSLVLSGKTEAENETAKLLKRNDTLKLPDDIEISISLHSERDKSLKESGFQIGSYMNSLSTDTFGRFLIWCSRIPSTQDVISQNFSDLPLGAVCVADVQFKGRGRSKNLWESPPGCLMFSFTIQMEDGRIVPLLQYVVSLAITEAVKDICDKKGLPYIDLKIKWPNDLYVNGLKVGGILCTSTYRSKKFNVTAGFQALEELYCQTWLHSGQRVIVQEKKEDQVVENVVTIQGLTPTGYLLAIGDDNQMCELHPDGNSLDFFKGLIKSKLV 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17263325 17271319 - Cp4.1LG01g20300.1 Cpe01g02028 463341

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02028 336 PANTHER HOLOCARBOXYLASE SYNTHETASE (BIOTIN-(PROPRIONYL-COA-CARBOXYLASE (ATP-HYDROLYSING)) LIGASE) 62 260 - -
Cpe01g02028 336 PANTHER BIOTIN PROTEIN LIGASE 62 260 - -
Cpe01g02028 336 PANTHER BIOTIN PROTEIN LIGASE 260 334 - -
Cpe01g02028 336 ProSiteProfiles Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) catalytic domain profile. 119 312 IPR004143 GO:0036211
Cpe01g02028 336 PANTHER HOLOCARBOXYLASE SYNTHETASE (BIOTIN-(PROPRIONYL-COA-CARBOXYLASE (ATP-HYDROLYSING)) LIGASE) 260 334 - -
Cpe01g02028 336 TIGRFAM birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 137 253 IPR004408 GO:0004077|GO:0036211
Cpe01g02028 336 Pfam Biotin protein ligase C terminal domain 274 329 IPR003142 GO:0036211
Cpe01g02028 336 Gene3D Bira Bifunctional Protein; Domain 2 122 295 IPR045864 -
Cpe01g02028 336 SUPERFAMILY Class II aaRS and biotin synthetases 121 260 IPR045864 -
Cpe01g02028 336 Pfam Biotin/lipoate A/B protein ligase family 138 260 IPR004143 GO:0036211
Cpe01g02028 336 CDD BPL 133 251 IPR004408 GO:0004077|GO:0036211
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02028 K01942 HLCS; biotin---protein ligase [EC:6.3.4.9 6.3.4.10 6.3.4.11 6.3.4.15] - csv:101206408 504.597
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02028 Cpe-Chr1:17263325 Cpe13g00596 Cpe-Chr13:5843214 2.78E-116 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g319 . . . . . . . . Cmo04g02446 . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0462 . . . . . Blo18g00194 . Bda01g01411 Bpe02g01624 . Bma01g00836 . . . . . . Car04g02259 Car15g00651 Cpe01g02028 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005522 1 4 1 1 1 1 2 1 0 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g02028 Cpe_Chr01 FPKM 5.412994 6.598806 13.772862 14.32386 8.285936 8.116835 9.130431 18.211103 15.990618 18.786285