Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02029 ATGGACAGGGAGGCTAACCTTCCGGTCCCGTCCGAACTTGCGAAGAAAGTGAGCCGTCAGACCATCCCGGAAACTACGTCGTCGTCTTCATCCTCATTTTCTTCCTCCTCACCGCCGGACTTCCTTCGACATGTTCAAGCTGCGTTCAAGCGCCATCGACCACTTGGTGTGACGCAGACAAATAGTATAAGACCCAGGCGTTTGTTAGTTCCCCAAAGAGAGGTGTCAAGGAACCCTCGTTCGCAGGCTGGGCTTGCAGAGAATGTTAAGGAGCCTGAAAATGAAGTTTCATTGAGTCAAAATCATGCAGTGAAGGATTTGATTGAACAGACGAAGAGCACAATGACTATTATTGGAGAAACTCCAGATGAATCAGTAACACCGCCTTCTATTTCAGGCCTGATGACCAAAAGCTTTGATGGAAGTTTCGCACCTGATGCCCACAGAGATGAACTTGTGCATGGTGCTGGTTGTCAATCAAGGAATGTGTCGTCCGCTTTAAATGCAGGATCCCAGCATGTTGATGGCCAAAAAATGGTTCGGTTTTCTGTTAACAGCAACAAGACATCTCAGGGGGCCCATGATCTAATGGCCTGTGGAGTGGAAAACTTATCATCTCATATGGGTTCACTTGCATTGACAGAGATGGATTGGATAGCCGGCAATCAAGGAGAAGCTTCTACTGTAATAAATCATGATGAATCTAAGCACCGAAGTTCTTCAAACACAGAGTGTGAAATGAACTTGAAGAACAATGGTGGGATTTCAATGCTGGCACAGAGAACACCAGCTATGGAAGATCAACTCAAGCGATTTGGAGACTTTTTGGCTCAACCAGTTAGTCAACCTTCATTTGGACCATCTTATGCAACCACCACGTCAGTTCACTCGAGTTCAGTGCCTATGCTCAATTCAACGACCTATTGCTCTCATTTACATCAAGAAGGTGTTGGTAATATTGCTACCGAACCTTTGAGTGGCTTTAGTGCAAATATTCAACATGAAGTTAAAAGAAATGTGATGCCAACATCAGGGTCTTCTCTAAAGGACATTAGTGGTGAGGACAAGAATGGGAAAGGCAATGATGACATACATGCTCTTAGCCGTGCTGTCGATACTGAAAAAGTTATAAGGCAAAATGACATCTGTCATGAGCAAAGGGGAAAGTTAGCTAGAGAAAGTGATATTCCAAAACATGCTTTGCAACATAATGATAAACCATATGAAGGCAAAGGTTTCATAGGGGATGCCATGGATACAAAATCAAAAGCCCAAGTACCTAAAAAGTCAGTTTCTGATGTGAATCTGGATCCTTCTGGTTCAGAGAAACATGAAAAAGTTGCAAGTGGGAAGAGCAGTTCAACAATTCGTAAGAGGAATTATGATCCAGACTTGTTTTTTAAGGTTAATGGAAAGCTTTATCAAAGACTTGGCAAGATAGGCAGTGGAGGAAGCAGTGAGGTTCACAAAGTCATCTCATCAGATTGCACGATATATGCACTTAAGAAAATTAAACTTAAAGGTCGTGATTATGCCACTGCTTATGGGTTCTGTCAGGAAATTGTGTATTTAAATAAGTTGAAAGGGAAGAACAACATTATACAACTTGTAGATTATGAGGTAACGGATAGGACTTTACTTCAGGAAGTATTGAATGGCTCCACGAATAATAAAGATGCTAGGGTCAAAGATGACGGGTATATATACATGGTGCTAGAGTATGGTGAAATTGATTTGGCTCACATGCTCTCACAGAAATGGAAGGAAATTGACTCGGATCAGATAATAGATGAAAATTGGCTTCGATTCTATTGGCAGCAAATTCTTCAAGCTGTAAACACAATACACGAGGAACGCATAGTTCACTCTGATTTGAAGCCAGCAAATTTTCTTCTTGTCAAAGGCTCCTTAAAACTAATTGACTTTGGTATTGCAAAAGCCATAATGAGTGATACAACCAACATCCAAAGGGATTCACAGGTGGGTACACTGAGTTACATGTCACCTGAGGCATTTATGTGCAATGAGAAAGATGCAAATGGAAACACCATCAAGTGTGGTCGACCATCTGATATTTGGTCCCTTGGCTGCATTCTTTATCAGATGGTTTATGGGAGGACCCCCTTCTCCGAGTATAAGACGTTCTGGGCTAAGTTCAAAGTTATTACAGACCCAAATCATGAGATTAAATATGAACCCATTGGTAACCATTGGCTTGTTGATCTAATGAAGAAGTGCCTTGCATGGGACCGCAATGAGAGATGGAGAATTCCTCAGTTACTTCAACATCCTTTTCTCGTACCCCCAGTCTCCCCACACCTATCCTTATCTCAACACCAGAGTTCCAAACTTCTGCAACGCATTGCAGAAACTTGTGAAAATGACCAGGAATCCTCGTATCTATGTTCTCAGCTTCATCAACTGCTCATTAACTCCGTGCAGCCGGTGACATCTCTCTTAATAAGTTCTAAAGACGATCAAAGCGAGCTATTTTCCCAAACGTCAAAGAACTTTTTTCTGCAACACAAAAATCTAGCTACTCAAAGATGA 2550 42.0 MDREANLPVPSELAKKVSRQTIPETTSSSSSSFSSSSPPDFLRHVQAAFKRHRPLGVTQTNSIRPRRLLVPQREVSRNPRSQAGLAENVKEPENEVSLSQNHAVKDLIEQTKSTMTIIGETPDESVTPPSISGLMTKSFDGSFAPDAHRDELVHGAGCQSRNVSSALNAGSQHVDGQKMVRFSVNSNKTSQGAHDLMACGVENLSSHMGSLALTEMDWIAGNQGEASTVINHDESKHRSSSNTECEMNLKNNGGISMLAQRTPAMEDQLKRFGDFLAQPVSQPSFGPSYATTTSVHSSSVPMLNSTTYCSHLHQEGVGNIATEPLSGFSANIQHEVKRNVMPTSGSSLKDISGEDKNGKGNDDIHALSRAVDTEKVIRQNDICHEQRGKLARESDIPKHALQHNDKPYEGKGFIGDAMDTKSKAQVPKKSVSDVNLDPSGSEKHEKVASGKSSSTIRKRNYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCTIYALKKIKLKGRDYATAYGFCQEIVYLNKLKGKNNIIQLVDYEVTDRTLLQEVLNGSTNNKDARVKDDGYIYMVLEYGEIDLAHMLSQKWKEIDSDQIIDENWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRDSQVGTLSYMSPEAFMCNEKDANGNTIKCGRPSDIWSLGCILYQMVYGRTPFSEYKTFWAKFKVITDPNHEIKYEPIGNHWLVDLMKKCLAWDRNERWRIPQLLQHPFLVPPVSPHLSLSQHQSSKLLQRIAETCENDQESSYLCSQLHQLLINSVQPVTSLLISSKDDQSELFSQTSKNFFLQHKNLATQR 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17271978 17277114 - Cp4.1LG01g20250.1 Cpe01g02029 463342

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02029 849 ProSitePatterns Protein kinases ATP-binding region signature. 480 502 IPR017441 GO:0005524
Cpe01g02029 849 MobiDBLite consensus disorder prediction 52 98 - -
Cpe01g02029 849 MobiDBLite consensus disorder prediction 438 455 - -
Cpe01g02029 849 MobiDBLite consensus disorder prediction 1 40 - -
Cpe01g02029 849 Pfam Protein kinase domain 474 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g02029 849 Gene3D Phosphorylase Kinase; domain 1 467 553 - -
Cpe01g02029 849 MobiDBLite consensus disorder prediction 338 362 - -
Cpe01g02029 849 PANTHER DUAL SPECIFICITY PROTEIN KINASE TTK 26 815 IPR027084 GO:0004712|GO:0007093|GO:0051304
Cpe01g02029 849 MobiDBLite consensus disorder prediction 420 455 - -
Cpe01g02029 849 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672|GO:0006468
Cpe01g02029 849 SUPERFAMILY Protein kinase-like (PK-like) 467 777 IPR011009 -
Cpe01g02029 849 PANTHER MIXED LINEAGE PROTEIN KINASE 26 815 - -
Cpe01g02029 849 SMART serkin_6 474 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g02029 849 MobiDBLite consensus disorder prediction 18 40 - -
Cpe01g02029 849 ProSiteProfiles Protein kinase domain profile. 474 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g02029 849 CDD PKc_Mps1 472 766 - -
Cpe01g02029 849 Gene3D Transferase(Phosphotransferase) domain 1 587 769 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02029 K08866 TTK, MPS1; serine/threonine-protein kinase TTK/MPS1 [EC:2.7.12.1] - csv:101214794 1328.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02029 Cpe-Chr1:17271978 Cpe05g00647 Cpe-Chr5:3949716 2.94E-22 dispersed
Cpe01g02021 Cpe-Chr1:17213329 Cpe01g02029 Cpe-Chr1:17271978 5.43E-23 proximal
Cpe01g02029 Cpe-Chr1:17271978 Cpe13g00598 Cpe-Chr13:5856466 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g316 . . . Bda03g00522 . Bpe04g00476 . . Cmo04g02447 Cmo15g00716 . . . . . . . . . . . . . . . . . . . . . Cone4ag1378 Cone7ag1553 . Cone20ag0460 . . . . Blo17g00188 . . Bda13g01492 . Bpe14g00372 . Bma02g00233 . . . . . Car04g02260 Car15g00648 Cpe01g02029 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003876 2 3 2 4 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62173 PF00069 Pkinase 3.10E-55 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g02029 Cpe_Chr01 FPKM 9.058188 9.796988 234.129044 232.994446 255.777756 319.623505 252.813217 99.253845 95.240738 92.613869