Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02030 ATGGCGGAGGCCGCGCCCTTCACCGCTGTCCTTAAATTTGCCGCTGAAGAATTTAAGGTGCCCCCGCAAACCAGCGCCATCATCACCAATGATGGCGTTGGAATCAACCCTCAGCAAAGTGCTGGCAATGTCTTCCTCAAGCACGGCTCTGAACTACGCCTGATTCCTCGTGATAGAGTCGGAGCTGCTGGATCTATGAGAATAACACTCACTCCTACACGCCAAAACGTACGAACATGCCTGCAGAACGATAGTATAATTCCCACGTTTTTGTTCCTCATGTTTACGAACTGCATAGCGAAGGAATTGCGCCATTGCGCGCAAGTTAGAGCTTTCAGGCGAGGCAATTCCCTTCATGCTTATTTGAGGAAATTTGGGTGTTTGAACGATGTGTTTATTGCGAACAATTTGATTTCAATGTACGCGGAGTTTTCGAATTTACGAGATGCAGAGAAGGTGTTTGATGAAATGACTGACAGAAATATTGTTACTTGGACCACCCTGGTTTCTGCATATACTGATAGTGGAAGACCTTATGAGGCACTCCGAGTGTTTAATGATATGCCGAAATCTGAGACGGCCAATGGGTACATGTATTCCGCGGTTTTGAAGGCATGTGGGCTTGTGGGTGATTTGGATCGGGGTAAGTTAATTCAAGAAAGAATATATGGGGGTAAGTTGCAGGGTGATACTATTTTGATGAATTCTCTCATGGATATGTTTGTGAAATGTGGAAGCTTGAGTGATGCGGTTAAGGTTTTTCACAATATTTCACGTGCGACCACAACTACTTGGAATATCATTATTTCTGGGTATAGTAAGGCCGGTTTGATGGTGGAGGCTGAAAAACTTTTTCATTGTATGCCACAGCCAAATGTTGTATCTTGGAACAGCATGATTGCTGGCTTTGCAGACAATGGGAGATATGTTATCAACAACTGTGACCAAGCTGCTTTGAATTTGATTTCATACATCCATTGCTCGGGTACGATGATGGACTCTTACACCTTTGGTGGTGCTTTAAAGGTTTGCATCAACTTATTAAGTCCAAGGGTTGGTTTTCAAGTACATGGTCTGATTGTCACTTGTGGTTATGAATTGGATTATGTTGTTGGAAGCATTCTTGTGGATCTCTATGCAAAACTAGGACGCATCGACGATGCATTAGCACTGTTCCATAGGCTTCCAAGGAAAGATATCATAGCCTGGTCCGGTTTGATCCTGGGGTGTGCTCAAATGGGATTGAACTGGTTAGCTTTCTCAATGTTCAAAGATATGCTCGAGTTGGCTCATGAAATAGATCATTTTGTCATTTCAACCACTCTGAAAGTCTGCTCCAATTTAGCATCTCTTAGAAGTGGAAAGCAGAATCTCCTGAAAGGCATTCCCCTGAAAGAGGCACCATTGGAGGAATTGGAAGAAGATGATGCAGATAACGATGAAGTTGTGGCTGATAGAACACCATTTTGTTCGTTCAAAGGAGGAGCTTTTGTGGATCTACTTGAACTTAAGGACTCATTGTTCTTAGAACCCATTGAAGAAGCCAATGCCCTTTTCTTGGTGCTTTGCTTAAAAGCTGCTGAAGCTGATGGTGGTGGTGTTGATTCCCTTTGCCTCAAAATCACCACTGCACCATTTCTTATGGAATAA 1650 43.33 MAEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVGAAGSMRITLTPTRQNVRTCLQNDSIIPTFLFLMFTNCIAKELRHCAQVRAFRRGNSLHAYLRKFGCLNDVFIANNLISMYAEFSNLRDAEKVFDEMTDRNIVTWTTLVSAYTDSGRPYEALRVFNDMPKSETANGYMYSAVLKACGLVGDLDRGKLIQERIYGGKLQGDTILMNSLMDMFVKCGSLSDAVKVFHNISRATTTTWNIIISGYSKAGLMVEAEKLFHCMPQPNVVSWNSMIAGFADNGRYVINNCDQAALNLISYIHCSGTMMDSYTFGGALKVCINLLSPRVGFQVHGLIVTCGYELDYVVGSILVDLYAKLGRIDDALALFHRLPRKDIIAWSGLILGCAQMGLNWLAFSMFKDMLELAHEIDHFVISTTLKVCSNLASLRSGKQNLLKGIPLKEAPLEELEEDDADNDEVVADRTPFCSFKGGAFVDLLELKDSLFLEPIEEANALFLVLCLKAAEADGGGVDSLCLKITTAPFLME 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17279931 17291308 - Cp4.1LG01g20330.1 Cpe01g02030 463343

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02030 549 PANTHER BNAC03G28070D PROTEIN 177 280 - -
Cpe01g02030 549 PANTHER BNAC03G28070D PROTEIN 309 456 - -
Cpe01g02030 549 PANTHER BNAC03G28070D PROTEIN 120 176 - -
Cpe01g02030 549 SUPERFAMILY Ubiquitin-like 2 61 IPR029071 -
Cpe01g02030 549 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 160 IPR002885 -
Cpe01g02030 549 Pfam Ubiquitin fold modifier 1 protein 2 55 IPR005375 GO:0071569
Cpe01g02030 549 Gene3D - 1 63 - -
Cpe01g02030 549 Pfam PPR repeat family 160 206 IPR002885 -
Cpe01g02030 549 Gene3D Tetratricopeptide repeat domain 351 461 IPR011990 GO:0005515
Cpe01g02030 549 Gene3D Tetratricopeptide repeat domain 223 349 IPR011990 GO:0005515
Cpe01g02030 549 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 177 280 - -
Cpe01g02030 549 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 309 456 - -
Cpe01g02030 549 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 120 176 - -
Cpe01g02030 549 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 161 191 IPR002885 -
Cpe01g02030 549 Pfam PPR repeat 294 309 IPR002885 -
Cpe01g02030 549 Pfam PPR repeat 402 428 IPR002885 -
Cpe01g02030 549 Pfam PPR repeat 374 399 IPR002885 -
Cpe01g02030 549 Pfam PPR repeat 234 256 IPR002885 -
Cpe01g02030 549 Pfam PPR repeat 264 289 IPR002885 -
Cpe01g02030 549 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Cpe01g02030 549 Gene3D Tetratricopeptide repeat domain 89 222 IPR011990 GO:0005515
Cpe01g02030 549 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
Cpe01g02030 549 TIGRFAM PPR: pentatricopeptide repeat domain 163 191 IPR002885 -
Cpe01g02030 549 TIGRFAM PPR: pentatricopeptide repeat domain 135 163 IPR002885 -
Cpe01g02030 549 TIGRFAM PPR: pentatricopeptide repeat domain 373 400 IPR002885 -
Cpe01g02030 549 TIGRFAM PPR: pentatricopeptide repeat domain 264 286 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02030 - - - bhj:120067076 443.736
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02030 Cpe-Chr1:17279931 Cpe09g00246 Cpe-Chr9:1415813 1.28E-12 dispersed
Cpe13g00600 Cpe-Chr13:5865823 Cpe01g02030 Cpe-Chr1:17279931 1.59E-37 dispersed
Cpe01g02030 Cpe-Chr1:17279931 Cpe03g00659 Cpe-Chr3:3931034 6.66E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g313 . . . . . . . . Cmo04g02450 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00193 . Bda01g01413 Bpe02g01626 . . . . . . . . Car04g02262 . Cpe01g02030 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009162 1 3 1 0 1 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g02030 Cpe_Chr01 FPKM 52.710484 58.169205 37.224239 36.846619 97.368332 76.244514 90.085587 60.75349 59.763618 65.519279