Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02032 ATGAAAATAAGAACATCGGAGAGCTCTCGAACTTTCACCATAATAAACAACTGCAAAGAAACAATCTGGCCGGCGATCTTCCCAGGAGAGCATTTCAACGGCGGCGGTTTTGCACTAAAACGCGGCCAATCCATAGTTTTCAAGGCGCCAGTAGGCTGGTCCGGTCGGATATGGGGTCGAACCGGTTGCAACTTCGACCAGACCGGAAACGGGCAATGCCAAACCGGTGCCTGTGGAACTTCCCTCAAATGTCAAGGCTCTGGAGAGACTCCGGCGTCCCTCGCCGAATTCACCCTCGCTGCCCTCGATTTTTACGACGTCAGCCTCGTCGACGGCTTCAATTTGCCGATGGCGGTGACGCCAATCAACGGAACCGGAAAGTGCGGCCTGGCCGGCTGCGATAGCGATTTGAGATCCAATTGCCCGTCGGCATTGGCGGTGAAATCGAAAGGGAAAGTCATCGCCTGCCGGAGCGCCTGCGATGTGTTTAACACCGATGAGTACTGTTGCAGAGGATCTTATGGGAATCCGTCGACTTGCCGGCCGACGGTTTACTCGAAGAAATTTAAGGAGGCGTGTCCGACGGCGTATAGTTATGCGTACGATGATCCGACCAGTATTTTCACCTGCAACGCCGCCGATTACGTCGTCAGCTTTTGCTCCGGCAGAGGATGGTGGCCTCTAATGGCAGTTGTTTTAGTCGTGATCAATTTATGGGTTATTTTTTAA 729 52.95 MKIRTSESSRTFTIINNCKETIWPAIFPGEHFNGGGFALKRGQSIVFKAPVGWSGRIWGRTGCNFDQTGNGQCQTGACGTSLKCQGSGETPASLAEFTLAALDFYDVSLVDGFNLPMAVTPINGTGKCGLAGCDSDLRSNCPSALAVKSKGKVIACRSACDVFNTDEYCCRGSYGNPSTCRPTVYSKKFKEACPTAYSYAYDDPTSIFTCNAADYVVSFCSGRGWWPLMAVVLVVINLWVIF 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17292240 17295536 - Cp4.1LG01g20320.1 Cpe01g02032 463345

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02032 242 Gene3D Thaumatin 10 220 IPR037176 -
Cpe01g02032 242 PRINTS Pathogenesis-related protein signature 35 44 IPR001938 -
Cpe01g02032 242 PRINTS Pathogenesis-related protein signature 103 119 IPR001938 -
Cpe01g02032 242 PRINTS Pathogenesis-related protein signature 56 67 IPR001938 -
Cpe01g02032 242 PRINTS Pathogenesis-related protein signature 69 98 IPR001938 -
Cpe01g02032 242 PRINTS Pathogenesis-related protein signature 11 23 IPR001938 -
Cpe01g02032 242 PRINTS Pathogenesis-related protein signature 211 220 IPR001938 -
Cpe01g02032 242 ProSiteProfiles Thaumatin family profile. 9 220 IPR001938 -
Cpe01g02032 242 SMART tha2 12 221 IPR001938 -
Cpe01g02032 242 CDD TLP-PA 11 220 - -
Cpe01g02032 242 PANTHER OS03G0233200 PROTEIN 6 227 IPR001938 -
Cpe01g02032 242 Pfam Thaumatin family 16 220 IPR001938 -
Cpe01g02032 242 SUPERFAMILY Osmotin, thaumatin-like protein 10 221 IPR037176 -
Cpe01g02032 242 PIRSF PR5 1 234 IPR001938 -
Cpe01g02032 242 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 6 227 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02032 - - - cmos:111464513 496.508
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02032 Cpe-Chr1:17292240 Cpe14g00309 Cpe-Chr14:1819251 2.17E-104 dispersed
Cpe01g02032 Cpe-Chr1:17292240 Cpe13g00601 Cpe-Chr13:5869389 8.64E-142 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g310 . . . . . . . . Cmo04g02452 Cmo15g00713 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00186 . . Bda13g01491 Bpe02g01628 Bpe14g00373 . Bma02g00227 . . . . . Car04g02271 Car15g00645 Cpe01g02032 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006626 1 1 2 1 2 1 2 1 1 2 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g02032 Cpe_Chr01 FPKM 6.926938 6.546589 16.922762 15.371641 38.206413 35.248302 38.504848 9.922791 10.462209 11.23709