Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02045 ATGAAGGGCGGCCATGGCGCTCTGGAGGTGGCCAAGACGGTCATGGAGTTGTACGCTCGTCTCGTTGCGACGGTGGATTCTGAAAAGTTCTTGAATGAAATTAAATCCCTCAACGAAGCATCAAAAGATGGAATTACCTATGAGTTTCCTTTCAGGGAAGCTACAGGAGCTGATTCGCACACAGCTGAGATTCTTGTGAATGTTAGCCGTGATGCACCCAGTTGGTGGATATGGGTTACTGAAGATATGGTTCCTAGTAAAGTTGAAGAATGGAGTGGGATTGATGATGAAAGCTATGTGATTGTATCTGAAGAACATGTGGTGGATGCAGTTGCCCACTTCATGGCTAGATGTATTATGTCCAACCCGAATACCCGGAATGTATCACCTGAAGAGCTGCAGAAAACAATAGCAAAAGCGCTGAAGGGTATGGGCAGCAAAATGGAGAAGATGTTTGAAATTTGGCATGCTGGGCTGCTGTTTTATTCCTTGGCCACTTGGGGACTTGCATTGGCGGGCTTGTACCAGGGTCGTGCTATATTGAAACTGGCTGCCACTGGTGTTCACCATACAAGCAAAGCAGTGATGAAGGTGCTCTGA 600 46.83 MKGGHGALEVAKTVMELYARLVATVDSEKFLNEIKSLNEASKDGITYEFPFREATGADSHTAEILVNVSRDAPSWWIWVTEDMVPSKVEEWSGIDDESYVIVSEEHVVDAVAHFMARCIMSNPNTRNVSPEELQKTIAKALKGMGSKMEKMFEIWHAGLLFYSLATWGLALAGLYQGRAILKLAATGVHHTSKAVMKVL 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17363598 17366542 + Cp4.1LG01g20420.1 Cpe01g02045 463358

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02045 199 PANTHER RING FINGER PROTEIN 16 199 - -
Cpe01g02045 199 PANTHER EXPRESSED PROTEIN 16 199 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02045 - - - cmos:111459551 369.777
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02045 Cpe-Chr1:17363598 Cpe11g00489 Cpe-Chr11:2834660 9.66E-16 dispersed
Cpe01g02045 Cpe-Chr1:17363598 Cpe13g00611 Cpe-Chr13:5923248 2.08E-126 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g281 . . . . . . . . Cmo04g02466 Cmo15g00701 . . . . Sed03g0792 . . Bhi04g01924 Tan11g1288 Cmetu03g2241 . Hepe02g2281 . Lcy10g1219 Cla08g00581 Cam08g0996 Cec08g0585 Cco08g0695 Clacu08g0705 . Cre08g0516 Cone4ag1397 . Cone17ag1277 Cone20ag0449 . . . . Blo17g00179 . . Bda13g01483 . Bpe14g00381 . Bma02g00219 . . . . . Car04g02283 Car15g00632 Cpe01g02045 . . . . . . . . . . . . . . . Lsi08g00427 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005536 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 2 1 1 1 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g02045 Cpe_Chr01 FPKM 45.752975 48.275494 27.226339 29.635529 28.220757 25.901693 26.257824 51.312588 52.480995 54.239754