Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02062 ATGTCGGAAGTAATTACTGTCATTGATATCGACGACGACATTGACGACAACGAAGCTGAAAAGCGAGTCAAGGGCAACAATGTCGCCAGTACTGCCGCCGTACCTGACGGCAAAGCGATACCCTGGGTCGAGAAGTTTCGGCCTAAGTCTCTTGCCGATGTTGCTGCTCACCGCGACATTGTTGACACCATTGACAAGCTGACCAGTGAGAATAGGCTGCCACATCTCCTATTGTACGGCCCTCCTGGCACTGGCAAGACATCAACCATTCTAGCAGTTGCCCGCAAGCTTTATGGAGCAAACTACCACAAGATGATACTCGAGCTGAACGCATCAGATGATAGAGGGATAGATGTTGTCAGACAGCAGATTCAGAATTTTGTCAGTACTCAAAGCTTTTCATTTGGGGTTAAACCATCTGTAAAATTGGTACTTCTGGACGAGGCAGATGCCATGACTAAAGATGCACAGTTTGCTTTACGTAGAGTAATTGAGAAATATACAAAAGGTACAAGGTTTACTCTTATCTGTAATCACGTAAATAAGATTATTCCCGCTTTACAATCAAGATGTACCCGCTTCCGATTTGCTCCCCTCGATAACTTTCATGTCACCAAACGACTCAGATATGTTATTGAGGCTGAGAGGTTGGACGTCTCTGAGAGTGGCTTAGCAGCCCTTGTTCGACTTTGTGGTGGTGATATGAGAAAGGCTTTAAATATTCTGCAGTCAACGCATATGGCTTCTCAGCATATTACTGACGAGGCTGTATACCTATGTACAGGAAATCCAATGCCCAAAGACATAGAACAAATATCATTTTGGCTGCTGAATGAACCATTTTCTGACAGTTTTAAGAGAATATCTGAAATAAAGACCAGAAAAGGATTAGCTTTGGTTGATATAGTGAGAGAAGTCACTATGTTTGTTTTTAAGATCAAGATGCCATCGGATGTCAGAGTTCAGTTGATTAATGATCTGGCTGACATAGAGTACAGAATGAGTTTTAGCTGCAACGACAAGTTACAACTCGGATTGCTCATCTCATCGTTTACTCAAGCCAGATGTGCACTCGTTGATGCTGCAGAGTAG 1092 43.22 MSEVITVIDIDDDIDDNEAEKRVKGNNVASTAAVPDGKAIPWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGANYHKMILELNASDDRGIDVVRQQIQNFVSTQSFSFGVKPSVKLVLLDEADAMTKDAQFALRRVIEKYTKGTRFTLICNHVNKIIPALQSRCTRFRFAPLDNFHVTKRLRYVIEAERLDVSESGLAALVRLCGGDMRKALNILQSTHMASQHITDEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALVDIVREVTMFVFKIKMPSDVRVQLINDLADIEYRMSFSCNDKLQLGLLISSFTQARCALVDAAE 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17463372 17469104 + Cp4.1LG01g20570.1 Cpe01g02062 463375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02062 363 PANTHER REPLICATION FACTOR C SUBUNIT 5 35 358 - -
Cpe01g02062 363 CDD AAA 60 198 - -
Cpe01g02062 363 Gene3D - 264 360 - -
Cpe01g02062 363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 257 IPR027417 -
Cpe01g02062 363 CDD HLD_clamp_RFC 203 261 - -
Cpe01g02062 363 SMART AAA_5 72 202 IPR003593 -
Cpe01g02062 363 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 35 358 - -
Cpe01g02062 363 SUPERFAMILY post-AAA+ oligomerization domain-like 264 354 IPR008921 GO:0003677|GO:0006260
Cpe01g02062 363 Pfam ATPase family associated with various cellular activities (AAA) 76 196 IPR003959 GO:0005524|GO:0016887
Cpe01g02062 363 Gene3D - 202 263 - -
Cpe01g02062 363 Pfam Replication factor C C-terminal domain 264 349 IPR013748 -
Cpe01g02062 363 Gene3D - 36 198 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02062 Cpe-Chr1:17463372 Cpe19g00815 Cpe-Chr19:6100226 1.70E-13 dispersed
Cpe01g00548 Cpe-Chr1:3153800 Cpe01g02062 Cpe-Chr1:17463372 8.88E-11 transposed
Cpe02g00567 Cpe-Chr2:3386282 Cpe01g02062 Cpe-Chr1:17463372 3.59E-55 transposed
Cpe10g01069 Cpe-Chr10:6439149 Cpe01g02062 Cpe-Chr1:17463372 1.22E-14 transposed
Cpe14g00835 Cpe-Chr14:6781291 Cpe01g02062 Cpe-Chr1:17463372 6.06E-64 transposed
Cpe01g02062 Cpe-Chr1:17463372 Cpe13g00630 Cpe-Chr13:6038030 6.06E-91 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02062 K10756 - csv:101217230 634.409