Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02067 ATCGTCGAAGTCCGCAACGACATTAAAGAGAGCGATAGAGAAGAAATGGCAAGTAGTCAACAGAAGGAAGCACAGATGAGTACGGTGGCGACGCCGTCCTTTGGCGGCGGCAGCAATCGCATAGCGGCGGTGAACACGGCGGAGACAACTACGATTCCGGCCGACGCCGTGAAGCCACAAAATCACCGAGAAGAACCAACCACCACCGATCAGTTTATGTTAATGTTGATGATTCAGAAACCTGGATGGAGAAAGTTTCTTTCACACGTTGGCCCTGTGGAAACCGACTTGCAGGCTGGAGCTAATCACGGATTTGAGGCAGCTTTTGTGGGTGGTGCTGGAAAACACCTTTCAGAAGTGTGTAAAGCCGAATATCCAAAACTTGTGAAGTACTGCCTTTGGCTGCTGGCTGAAGTCGCTGTAATAGCCGCCGATATTCCAGAAGGCAATTATTATCTTATTATTTATTTATTATTATTAATATACAAATTAAATAAATTAATTTTATATTTCTTTATTTTTTGTTTGGTTGCAGTGATAGGAACGGCCTTTGCCCTGAATATTCTATTCCATATTCCGGTTTGGGCTGGAGTTCTTCTCACCGGTTTAAGCACCCTCTTGCTCATAGGGCTCCAGAGATACGGGGTGAGGAAGCTGGAATTGCTGATAGCGATTTTGGTGTTTGTAATGGCGGCGTGTTTCTTCGGGGAAATGAGCTACGTTAAGCCGCCGGCGACCGGAGTTTTGAAAGGAATGTTTGTGCCGAAACTGAACGGGCAGGGTGCCACCGGCGACGCCATTGCTCTCCTCGGCGCTCTGGTTATGCCGCACAATCTGTTTCTTCATTCGGCTCTCGTGCTCTCAAGGAAAGTTCCAAATTCTGTCCGTGGTATCAACGACGCGTGCCGGTATTTCCTAATAGAGAGCGGTTTCGCATTGTTCATATCCTTTTTAATAAACATGGCCGTCGTTTCAGTTTCCGGCACCGTCTGTACGGTCGGCCATGTCTCTGAATCCACCGCCGATCAGTGCTCCGACATCACCCTCAACTCCGCCTCCTTCCTCCTCCAGAATGTGCTGGGAAAATCGAGCTCCACTATTTACGCCATAGCGTTGCTTGCCTCCGGACAGAGCTCCAGCATCACCGGCACTTACGCCGGACAGTTCATCATGCAGGGATTTTTGGACCTGAAAATGAAAACATGGATGAGGAACCTTATGACCAGATCCATTGCCATTACGCCCAGTCTCATTGTCGCCATTATCGGTGGACCTCAAGGAGCTGGACGTCTTATCATCATCGCATCGATCATTGTAATCTCATGGATATTGGGCCTGTCAATCATCGGCATCAATATCTATTATCTCAGTACGGGCTTTGTGGGCTGGCTTATCGACAACAATTTACCCAAAGTTGCTAATGTATTCATTGGGATCGTTGTATTTCCTTTGATGGCCGTTTATATTCTCGCTGTTATTTACTTAACGTTCCGAAAGGATAGGGTTGTGACTTACATTGAGCCCCAAAAGCCCGACCCGATGGCCCAAGCCCATTTGGAAAGTGGGCTGCATAATTCTTTTGGGCCTGGTGACGTCGCCCCGGTTCCTTTTAGAGACGATTTGGCCCATATCCCACTTCCAGAGCTCCCCTTTTCTGGTGAGGAAGGAGACCCAGTACCGGCCAATGCCCCAGCCATTAACCCAAACTGCACCTTTCCCCATGGAACCAAGGTTCAGGGCGATAGGGTCACCGCCCGA 1758 48.69 IVEVRNDIKESDREEMASSQQKEAQMSTVATPSFGGGSNRIAAVNTAETTTIPADAVKPQNHREEPTTTDQFMLMLMIQKPGWRKFLSHVGPVETDLQAGANHGFEAAFVGGAGKHLSEVCKAEYPKLVKYCLWLLAEVAVIAADIPEGNYYLIIYLLLLIYKLNKLILYFFIFCLVAVIGTAFALNILFHIPVWAGVLLTGLSTLLLIGLQRYGVRKLELLIAILVFVMAACFFGEMSYVKPPATGVLKGMFVPKLNGQGATGDAIALLGALVMPHNLFLHSALVLSRKVPNSVRGINDACRYFLIESGFALFISFLINMAVVSVSGTVCTVGHVSESTADQCSDITLNSASFLLQNVLGKSSSTIYAIALLASGQSSSITGTYAGQFIMQGFLDLKMKTWMRNLMTRSIAITPSLIVAIIGGPQGAGRLIIIASIIVISWILGLSIIGINIYYLSTGFVGWLIDNNLPKVANVFIGIVVFPLMAVYILAVIYLTFRKDRVVTYIEPQKPDPMAQAHLESGLHNSFGPGDVAPVPFRDDLAHIPLPELPFSGEEGDPVPANAPAINPNCTFPHGTKVQGDRVTAR 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17516796 17521129 - Cp4.1LG01g20720.1 Cpe01g02067 463380

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02067 586 MobiDBLite consensus disorder prediction 1 40 - -
Cpe01g02067 586 MobiDBLite consensus disorder prediction 1 19 - -
Cpe01g02067 586 PRINTS Natural resistance-associated macrophage protein signature 404 421 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe01g02067 586 PRINTS Natural resistance-associated macrophage protein signature 191 210 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe01g02067 586 PRINTS Natural resistance-associated macrophage protein signature 163 189 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe01g02067 586 PRINTS Natural resistance-associated macrophage protein signature 216 237 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe01g02067 586 PRINTS Natural resistance-associated macrophage protein signature 376 395 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe01g02067 586 PRINTS Natural resistance-associated macrophage protein signature 266 289 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe01g02067 586 MobiDBLite consensus disorder prediction 565 586 - -
Cpe01g02067 586 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 437 548 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe01g02067 586 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 77 439 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe01g02067 586 PANTHER METAL TRANSPORTER NRAMP5 437 548 - -
Cpe01g02067 586 PANTHER METAL TRANSPORTER NRAMP5 77 439 - -
Cpe01g02067 586 Pfam Natural resistance-associated macrophage protein 170 449 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe01g02067 586 MobiDBLite consensus disorder prediction 20 40 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02067 K21398 SLC11A2, DMT1, NRAMP2; natural resistance-associated macrophage protein 2 - csv:101219356 751.895
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02067 Cpe-Chr1:17516796 Cpe03g00912 Cpe-Chr3:5867368 5.60E-155 dispersed
Cpe01g02066 Cpe-Chr1:17483507 Cpe01g02067 Cpe-Chr1:17516796 3.15E-17 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g233 . . . . . . . . Cmo04g02499 . . . . . . . . . . . . . . . Cla08g00615 Cam08g1029 Cec08g0618 Cco08g0730 Clacu08g0739 . Cre08g0547 . . . . . . . . . . . . . . . . . . . . . . . Cpe01g02067 . . . . . . . . . . . . . . . Lsi08g00455 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007979 0 1 2 2 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 2 1 1 1 1 1 1 1 2 35