Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02076 ATGGGTTCATGTGATGACCCGGCTGTGATCGGGGAACCGTTTTGCGGCTCTGGTACTCGTCTGGTCAGCTGTTCGAGTCAACCTCTTCCCAAGCAGCAGTCACGCCAGGAGATGGCTTCCTTCCCATCTAGTTCTAGTAAGGGGCAGATGTTTGAACCAGTTCGGGAACTGGGAGTGATTATGAATAATGTCTGCACGAATGTATCGGAGCTAGCGGCTGAAGGGGAGGATTGGACATTCAGAGGCCCCGAACATGTAGATACTCTACTATTGGAGGGAAGGTTGGGAAGTGATTCCGGTTCGGGCGATAATGATCCCTATCTAAATGAGGAGAATGAGGCTTGCATCTTGGGGAATAGAACATTGAGCTTGGGTATGGAAGAGTCTCCAGACGTTGGTGGTCTGGTTGATATTTTGGGCTGTAAAACTACCATGGAAATGATATCTTTAACTGGGTCATTAGTAAATTCTGTTAAACCCGATGAAGTGGATAATAAGACTTTTGCAATTGATGGCAGTGCAGAAGTTGAAAGAGATGATACAGTAGAAAATGGTCCTATTTTAGCAGGGACGTGTACTTGTACAGATGACTTAAAATCTCCTAAAGTCTGTGAAATTGTTTCTAATTCAGCTTCTGCTGATGAATTGACAAGTGACTACATACAACAGAACGAGCTGGAAAATGATGGCACTGGATGTTCGTTTTCAGAGGTCACCGATGGGATAACTGATGCTTCAGTTGTTATAGAAACAGACGTGTTGAATGAGATGTCCCCTTTACAGAGTGCTCAAGTACTATCAGTACGTTTGGGAGAATCAGTTGCCAATTATGATCAGTATATTTGCAATATGGACGGGGAGGGCTTCAGTGGTGGTATCTCTGGAGAAACAGTTATTAAAGTTGCTGATATGAACAGCAATCCTGAATTTTGCTTGCAGATGTTGCCTTCACAAGGCTGCGAGAAGATAAGGGAATGGTTTCAATCTGATGGTTCACCACTAACCAGTCACGCTCTAGAAAATGATCTGTGTGATGCAAAGCATGACAGTAATTCCTTATCCAAGTACGTTTCAGAGGTTGCAGAAGACGATATTGATGTCTTGACTAGTCATAATGGTGATGCTGGACAACATATGGATCCCAAGATAGAAAATGACCATAATCTGGAGGAAGCTACTCTTCAAGTGAACCCATCTTCTAAGAGGAGTGGCCGGACGAAAACATCAAGCCAAAAAACTGTGACTAAAAGGGCATCCAGGAAAAGCAAAAAAAAAGTGTCAGAGGCACTGATTCTTGAGATTGCACGGAGGAGGAGAAGCTCTATATCCAGGCCTGCTCGTCCTTCACCCTGGGGATCACTGGGTTATATTATTCAGTCATTTGAAAGAATTGACGATGTTCTAGTAAATCAAAGCCAGAAGCAAGGAAATAAGAAATCTGAAGGTAATCAAGGAGGCACCAAGCGGAATAAGAAACAGCCAAGTGAAAGTACACATAGATCAAGAAAAGGGATCCAAGGAAAATGTGCTACTTCAACTTCAACCAATCGTATTCGTTTGAAGGTTAAATTAGGGAAGAACGCAGGTCATAATTTTCTGAACATTGTGGTTCCCGAGATTGTTGATTCATCATTGTCTGCCAAGGGTAACAATTGCAATTATGGGGACGAATCGTATTGGGAAGGTAATTTGGAATTTCCACCATCAACCCTTGGCGTTGATGATCAAAAGCCTGATGAGGGGCCTTTAAGAATGATCTCCAGCTACAACAGGAATCAGGAGAAAGAAGAGAAATGTCCAGATGCTTCTGTTGTCAAGGAACAATGTGCTAATAATGACTCAAGTTGCACCATTATTGTGGACAAGCCATCTGCAAAACATGCAAATGATAATCTCTGTGTTTCCTCCCATTTGGTTGAGCCTGTAGAAAGGGCAAGTGATGCTAGGAGTTTGGATCCTGGAACTTCACCTGATTCAGAAGTGATAAATTCAATCTTAGATATTCAAGTTGGAGCAATACGTCAGGAAATTTTTCAGGACTCAGTTTTGGCATCCTCAGACAATTTTGCGGCTTCTGGACATGTTACCAGTAGTAAGAATGGAAGGAAAGAGAAGCCCAGTGAGGTCGTTACTTATTCTCAGGAAGGTGGCACAGGTGCTTCTGCTTGCAGGAACAGGTCCAAAGCATCAAAGAAGCATGGACAAAGACTGAACGTGGACTATCAGCTTGGTTCTGGGACTGAACTTCCAGAAGAGGCTTTGAAAGTGGAAGGCGCTCTCGAAGTTAAAGAATGTTGCAGAACAGATGTTGGCAGTGTCTTTCCTGAATCAGAGACTTTGAAAACATTTCTTCCTTCTCAATCTGCAAGGAAAAAACATACCAAAAATTCAAAACCTATTAAAACAAGTAAAGGCAGGTCCAAGACTACTTGCTCAAAAAGCAAAGTACAGAATGCTTCTAAAGAGAGGGTTTACCAACGGAAGTCTGTTAATAAGAGTAAAATCAAGAAGGGTGTATGCCAACAAGTTTTGACTGAAACGGAAAGTCACCAAGTAGTGGGACATTACCTTGTAGACAAGCCAGAGAAAAGCGATGACATCACTGCATCCACTGCGGCAGTAAATTTGAATGTGGTTCAGGGCGCTGTGAATGAGCAGTATACACCTCCTCGCAATGCTTGGGTGCTCTGTGATGATTGTCATAAATGGCGACGCATACCAGCTTCTCTTGTTGATAGTTTAGGACATGCAAGTTGCACATGGACTTGTAAGGACAATGTGGATAAAGCTTTTGCTGATTGCTCAATCCCACAAGAGAAGTCAAATGCAGAGATTAATGCAGAGTTGGAAATATCTGATGAATCTGGGGAAGAAAATGCTTCCAATAAACGGCTAACTTATAGGGAATTAGAGAGTTTTCATCCAACAACAGTGACGGTAGTTCCTCAGGAGAACAAATTTTCTTCAATTAGTAGCAATCAGTTTTTGCACCGCAGTCGTAAAACTCAAACTATTGATGAGATAATGGTTTGTCATTGCAAACCGTCTTTGGATGGCCGGTTAGGATGTGGAGATGAATGCTTGAATCGAATGCTCAATATTGAATGTGTCCGAGGTACATGTCCTTGTGGAAACCTTTGTTCTAATCAACAGTTCCAGAAACGCAAATATGCCAAATTACGGTGGTTGCGATGTGGAAAGAAAGGTTATGGGCTGCAGTGTCTTGAAGATATATCAAAAGGACAATTTCTCATCGAGTATGTTGGAGAGGTTCTTGACATGCATGCTTATGAGGCACGTCAAAAGGAGTATGCATTGAATGGTCATCGACATTTTTACTTCATGACACTCAATGGCAGTGAGATCATAGATGCATGTGGCAAGGGAAATTTGGGGCGTTTCATTAACCACAGCTGTGATCCAAATTGCCGCACAGAAAAGTGGATGGTGAATGGAGAAATCTGCATTGGGCTCTTTGCGCTAAGTGATATTAAGAAGGGTGAAGAAGTGACATTTGACTACAATTATGTAAGGGTATTTGGGGCTGCTGCCAAAAGATGTTATTGTGGTTCTTCCCATTGTCGAGGTTATATAGGTGGTGACCCCCTCAATTCTGAGGTCATTATTCAAAGTGATTCAGATGAAGAATTTCCAGAACCAGTGATGGTTCGTGCAGATGGTAGAAGTTGGAATAATAGCTTGCAAACTGCAGTTAGTTCGTTGGATGGTGCTAAAATGCAGCCCTCAGAGCGTATAAGAGGGGTTAAGGATAAGAGAGAACAACCTATCAGTATAGCTATCGAATCGAAGATTTCAGAACAAAAAGAGGATCCTCTTAAGGTTTCTGCTGCGAAAATTTCTGAAGAAAAAGAGGATCCTCTTAACCTTTCTGCCTCTACCATTTCACCATTGCACAGTTCATTGGAATTTGAAGACTCAAAGGTAGCATCACCGATTCCACTGCCGGAAATAACCCAGCAAACTGAAGATGTGACGAGCAAACCTGTGTTTGTTGATCAGACAGAAATATCTCTTATGGAAAGTATTTCCAACAAAAACACGTGCTCTAATGAGCAGGAAGCAAAGTTATCATTTGATGACTTTGATGCTCGTAAGAAATCCAAGTTGGATGCTGTTGAAGATAAGAAAGTGTATATAAAGTTGCATCCTCAAATGAAAACTTCACGTAAACCAGGTTCCATCAAGAAAGGAAAAGTTTGCTCGGTAGAAAAAGTTCAAATAACTAACAAGCCCCAGATTTCGTCTGTAAAGCCCAAGCGATTGATTGAAGGTTCTTCAGGTAACCGCTTTGAGGCAGTTGAGGAGAAGCTTAATGAACTCCTGGATGCTGAAGGGGGAATTAGCAAAAGAAAAGACGCCCCTAAAGGGTACTTAAAGCTTCTTCTCCTGACTGCTGCATCAGATGCAAGTGCCAGTGGTGAAGCAATTCAAAGCAATCGAGATCTTTCAATGATCCTTGATGCTCTTTTGAAGACAAAATCACGAGTAGTATTGACTGACATAATAAACAAAAATGGTTTGCGGATGTTGCATAATATAATGAAGCAATACAGAAGTGACTTCAAAAAGATACCTATTCTCCGGAAACTTTTGAAGGTCTTAGAATACTTGGTGATGAGAGAGATACTCACATCAGAGCTTATTAATGGAGGTCCTCCTTGCCCTGGAATGGAAAGTTTGAGGGTGTCTTTACTGTCACTCACAGAGCATGACGACAAACAGGCCTTTATCTATGGCCAAAAGCTTTTGAAGTCCAGTTTTGATGAGTTAAGTGTGGACCTGCAGGTACATCAAATTGCCCGAAGTTTTCGAGACAGATGGTTCCCCAGACATAATAGAAAATTTGGTTACTCTGAGAGGGAGGATGGGAGATTGGAAGCTTACAGGGGTTCAAACTGCAGTAGGTTTACAGCATCTCACAGTTACCGGCATGATCAGGATTCTAGACCCACAGATGCCATTGACTGTGTTAAGCAGTCGTCAATTCCAGTGTCTCTTCCAGATGCTCATCCTGCAGATGTTTGTTCTGTGGCTTCTACAGCTGGTCATTTATTGGATGGACAAAAAATTCGTAAGCGTAAGAGTAGATGGGATCTGCCTGCAGACACAAGCCTAGATCTGAGATTCAAGGAGCAGAAGCTTGAATCAACATTGGTGCAGCGATTTGATTCCAGCCAAATAGATAGTGTTGGAGTGGCACCAATGTCGATAGACAAGGTAAACAGTGTAGATAAAGACTCCTCCTTCTCTGATTCTGTGGAAGTATGTTGTTGCCAAGACGAAGATATTAGGGCAGATAGTGCAGTGCAAAACATCCCTGAAGATATTCCTCCTGGATTTTCATCTCCCTTCAATCTCCCTGTGGCTTCCTCAAGTCCTTTTTCAACAGTTTTAGATCCTCCTCGACAGAGTATTGGCAATTTGAGTTGTGCTTTTTCCACGGTTGGGCATCCACAGGAAAGATATATTTCTCGCTTGCCTGTGTCCTACGGAATTCCGTTTTCTATTGTTCAGCAATGTGGAACATCCTGTGCAGAGAATCTGGAGTGTTGGGATGTTGCTCCTGGTGTGCCTTTTCATCCTTTTCCACCCTTGCCACCATATCCCCGGGGTACGAGAGGCCCACTAATGTCTGCCTGTGGTACTTCCGATAGACAATGTTCTCAAGAAGGGCAGGCGAACAGCCACGATTCTCGAACTTCTTTCTCAGAAGAAGGCACTCCTTGTACAAGTACTACATACCAGCAGGATTTGTGCATTCTATCAAACAACCAACAGATACTAAAACAGGCTAAGGAATCATCATATGATTTAGGAAGAAGGTACTTTAGGCAGCAAAAGTGGCGTAATACACAGTTTGGCCCCCATTGGTCACAGAGAAGGAATCAATGGGGATACCAGGGAAACATCAGGGGTGGAGCAAGCACTACGGGTGATGAAAATATACCAAACGAAGGGATAAATCCATATTGCTCGGATGAACCAAGCGTTAGAGTGGATAAAGCTAATGACGATTCTCATCAGCATGTGCAAAACCAAAATCAGCGTTAA 6072 42.52 MGSCDDPAVIGEPFCGSGTRLVSCSSQPLPKQQSRQEMASFPSSSSKGQMFEPVRELGVIMNNVCTNVSELAAEGEDWTFRGPEHVDTLLLEGRLGSDSGSGDNDPYLNEENEACILGNRTLSLGMEESPDVGGLVDILGCKTTMEMISLTGSLVNSVKPDEVDNKTFAIDGSAEVERDDTVENGPILAGTCTCTDDLKSPKVCEIVSNSASADELTSDYIQQNELENDGTGCSFSEVTDGITDASVVIETDVLNEMSPLQSAQVLSVRLGESVANYDQYICNMDGEGFSGGISGETVIKVADMNSNPEFCLQMLPSQGCEKIREWFQSDGSPLTSHALENDLCDAKHDSNSLSKYVSEVAEDDIDVLTSHNGDAGQHMDPKIENDHNLEEATLQVNPSSKRSGRTKTSSQKTVTKRASRKSKKKVSEALILEIARRRRSSISRPARPSPWGSLGYIIQSFERIDDVLVNQSQKQGNKKSEGNQGGTKRNKKQPSESTHRSRKGIQGKCATSTSTNRIRLKVKLGKNAGHNFLNIVVPEIVDSSLSAKGNNCNYGDESYWEGNLEFPPSTLGVDDQKPDEGPLRMISSYNRNQEKEEKCPDASVVKEQCANNDSSCTIIVDKPSAKHANDNLCVSSHLVEPVERASDARSLDPGTSPDSEVINSILDIQVGAIRQEIFQDSVLASSDNFAASGHVTSSKNGRKEKPSEVVTYSQEGGTGASACRNRSKASKKHGQRLNVDYQLGSGTELPEEALKVEGALEVKECCRTDVGSVFPESETLKTFLPSQSARKKHTKNSKPIKTSKGRSKTTCSKSKVQNASKERVYQRKSVNKSKIKKGVCQQVLTETESHQVVGHYLVDKPEKSDDITASTAAVNLNVVQGAVNEQYTPPRNAWVLCDDCHKWRRIPASLVDSLGHASCTWTCKDNVDKAFADCSIPQEKSNAEINAELEISDESGEENASNKRLTYRELESFHPTTVTVVPQENKFSSISSNQFLHRSRKTQTIDEIMVCHCKPSLDGRLGCGDECLNRMLNIECVRGTCPCGNLCSNQQFQKRKYAKLRWLRCGKKGYGLQCLEDISKGQFLIEYVGEVLDMHAYEARQKEYALNGHRHFYFMTLNGSEIIDACGKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALSDIKKGEEVTFDYNYVRVFGAAAKRCYCGSSHCRGYIGGDPLNSEVIIQSDSDEEFPEPVMVRADGRSWNNSLQTAVSSLDGAKMQPSERIRGVKDKREQPISIAIESKISEQKEDPLKVSAAKISEEKEDPLNLSASTISPLHSSLEFEDSKVASPIPLPEITQQTEDVTSKPVFVDQTEISLMESISNKNTCSNEQEAKLSFDDFDARKKSKLDAVEDKKVYIKLHPQMKTSRKPGSIKKGKVCSVEKVQITNKPQISSVKPKRLIEGSSGNRFEAVEEKLNELLDAEGGISKRKDAPKGYLKLLLLTAASDASASGEAIQSNRDLSMILDALLKTKSRVVLTDIINKNGLRMLHNIMKQYRSDFKKIPILRKLLKVLEYLVMREILTSELINGGPPCPGMESLRVSLLSLTEHDDKQAFIYGQKLLKSSFDELSVDLQVHQIARSFRDRWFPRHNRKFGYSEREDGRLEAYRGSNCSRFTASHSYRHDQDSRPTDAIDCVKQSSIPVSLPDAHPADVCSVASTAGHLLDGQKIRKRKSRWDLPADTSLDLRFKEQKLESTLVQRFDSSQIDSVGVAPMSIDKVNSVDKDSSFSDSVEVCCCQDEDIRADSAVQNIPEDIPPGFSSPFNLPVASSSPFSTVLDPPRQSIGNLSCAFSTVGHPQERYISRLPVSYGIPFSIVQQCGTSCAENLECWDVAPGVPFHPFPPLPPYPRGTRGPLMSACGTSDRQCSQEGQANSHDSRTSFSEEGTPCTSTTYQQDLCILSNNQQILKQAKESSYDLGRRYFRQQKWRNTQFGPHWSQRRNQWGYQGNIRGGASTTGDENIPNEGINPYCSDEPSVRVDKANDDSHQHVQNQNQR 2023
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17594309 17617803 + Cp4.1LG01g20810.1 Cpe01g02076 463389

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02076 2023 MobiDBLite consensus disorder prediction 470 491 - -
Cpe01g02076 2023 PANTHER SET DOMAIN PROTEINS 1600 1938 - -
Cpe01g02076 2023 PANTHER SET DOMAIN PROTEINS 409 1581 - -
Cpe01g02076 2023 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-36 SPECIFIC 1600 1938 - -
Cpe01g02076 2023 MobiDBLite consensus disorder prediction 803 819 - -
Cpe01g02076 2023 MobiDBLite consensus disorder prediction 25 47 - -
Cpe01g02076 2023 MobiDBLite consensus disorder prediction 1975 1990 - -
Cpe01g02076 2023 MobiDBLite consensus disorder prediction 395 413 - -
Cpe01g02076 2023 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-36 SPECIFIC 409 1581 - -
Cpe01g02076 2023 ProSiteProfiles Zinc finger CW-type profile. 888 942 IPR011124 GO:0008270
Cpe01g02076 2023 MobiDBLite consensus disorder prediction 784 828 - -
Cpe01g02076 2023 MobiDBLite consensus disorder prediction 470 512 - -
Cpe01g02076 2023 Gene3D - 891 951 - -
Cpe01g02076 2023 SMART PostSET_3 1183 1199 IPR003616 -
Cpe01g02076 2023 Pfam CW-type Zinc Finger 894 940 IPR011124 GO:0008270
Cpe01g02076 2023 ProSiteProfiles SET domain profile. 1058 1175 IPR001214 GO:0005515
Cpe01g02076 2023 SUPERFAMILY SET domain 987 1196 IPR046341 -
Cpe01g02076 2023 Pfam SET domain 1069 1175 IPR001214 GO:0005515
Cpe01g02076 2023 SMART shorttest3 1006 1057 IPR006560 GO:0005634|GO:0018024
Cpe01g02076 2023 MobiDBLite consensus disorder prediction 1886 1915 - -
Cpe01g02076 2023 ProSiteProfiles Post-SET domain profile. 1183 1199 IPR003616 -
Cpe01g02076 2023 ProSiteProfiles AWS domain profile. 1006 1056 IPR006560 GO:0005634|GO:0018024
Cpe01g02076 2023 Gene3D SET domain 957 1215 IPR046341 -
Cpe01g02076 2023 MobiDBLite consensus disorder prediction 693 736 - -
Cpe01g02076 2023 SMART set_7 1058 1181 IPR001214 GO:0005515
Cpe01g02076 2023 MobiDBLite consensus disorder prediction 395 425 - -
Cpe01g02076 2023 Pfam AWS domain 1020 1055 IPR006560 GO:0005634|GO:0018024
Cpe01g02076 2023 MobiDBLite consensus disorder prediction 711 725 - -
Cpe01g02076 2023 MobiDBLite consensus disorder prediction 1975 2023 - -
Cpe01g02076 2023 CDD SET_SETD2 1057 1199 IPR044437 GO:0010452|GO:0046975
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02076 - - - csv:101204735 2979.12
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02076 Cpe-Chr1:17594309 Cpe18g00585 Cpe-Chr18:6266661 2.04E-36 dispersed
Cpe13g00692 Cpe-Chr13:6459993 Cpe01g02076 Cpe-Chr1:17594309 2.04E-53 transposed
Cpe01g02076 Cpe-Chr1:17594309 Cpe13g00643 Cpe-Chr13:6125977 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g211 Blo01g01308 . Bda01g00676 . Bpe02g00629 . . Bma01g02090 Cmo04g02507 Cmo15g00659 . . . . . . . Bhi04g01862 Tan11g1236 . . Hepe02g2211 . Lcy10g1258 Cla08g00625 Cam08g1044 Cec08g0630 Cco08g0742 Clacu08g0751 . Cre08g0560 . . Cone17ag0818 Cone20ag0423 . . . Cme03g00490 . . . . . . . . . . . . . Car04g02314 Car15g00596 Cpe01g02076 . . . . . . . . . . . . . . . Lsi08g00466 . Chy03g00750 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003381 1 5 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 2 1 6 3 1 48
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48919 PF00856 SET 7.70E-19 No_clan Cpe TR