Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02077 ATGAGATTGCTCCAAAATGGGGTCGCCGGCGAGCCACTGCAAGTTGATTCCGGCCGTTCTGTGCTTGTGGGCATGAAATTAGACTCCCATAGTAGAGAGCTGTTAACTTGGGCTTTGGTTAAGGTCGCTCAACCGGGTGACCTTGTGATCGCTCTTCATGTTCTTGGCAACGATGAAATCGTTAATCGCGATGGGAAATCTTCGCTTCTTTCTCTTGTGAAAACGTTCGACTCTGTTCTTGCTGTTTATGAAGGTTTCTGTAACTTGAAACAGGTGGATTTGAAGCTCAAAATCTGCAGGGGAGCATCGGCTAGAAAAATCTTAGTTCGTGAAGCAAAATCGTATTCTGCATCTAATTTAATTGTTGGGACTGCTCGAAAACACCATAAAATCCGTTCATCGAGTTCGGTTGCCAAGTACTGCGCTAAAAAATTGCCCAAACATTGTTGGGTACTCGCTGTTCATAATGGGAAAGTGACATTTGAACGAGCTGCAGTAGCTACAGGGGACTGCCAAGGAAATAAAGTTGAAAGTGATCTGGGAATTGGTAAGGATTCGGATCAGGGATTTGCAAAAGGCGTAATGGATAGTTCTTATAAACCGAACTGTTCGATTTGTGGATCGGAGTCGAGTTCTTTGGTACAATCTGCAGTGATATCTTCTGGTGATGGAGATGAACATGATGAATCTTTTGCCATTGTTCCTGTTCAAAAAGTTGAGGTAGCTTCGAGTTCAATTACTAAGTTGATCAAGGAATCGCCTGAAGTACAACCCGGTTGGCCTCTTCTTCGCCATGCTGATCAATCCGGTCGACGAGCTTCGTCCGACAAAGCCTTGGCCAAGCAAATCTCTGTAGTTCAATGGGCAATGAGGTTGCCTAACCGGTCTGCTTCAGACCCTGCTGCTTTGGATTGCAATTCTAATACATCTGGTCAAGCTATGGTTCTGGTCGGTTCTGAACCGGTGACTTCTTCGCTCTCCCCCAACCCCAGTTCCATACCGAAAGAATTGGAAGGTTTTCATGATAAATACTCGTCGTCGTGTAGATTGTTTAGTTATCAAGAACTCGTTACAGCAACGTCGAATTTCTTACCTCAAAACTTGATAGGGAAAGGAGGAAGCAGCCAGGTTTTTAGAGGTCGTCTTCCCGACGACAACGAGGTTGCTGTCAAGATCTTGAAGCCATCGGAAGACGTTCTAAACGAGTTCTCTGTGGAAATCGAGATCATTACGTCCTTAAGCCACAAGAATATCATTTCTCTCTTGGGATTTTGCTTTGAAGATAGTAAATTCCTGTTGGTTTATGATTTCCTGTCAAGAGGATGCCTTGAAGATATCCTTCATGGGAATGGAAAGAGTTCGAACGCATTTGGCTGGAGCAAAAGATATAACGTAGCCGTCGGTGTAGCCGAGGCGTTGGATCATCTTCACAGCGACTCTCAGCACGTGATCCATAGGGATGTTAAATCGTCGAACGTTTTGTTATCTGACAATTTCGAACCGCAGTTATCAGATTTCGGGCTGGCGAAACGAGCATCAAAATCATCGCACGTAACCTGTACTGATGTTGCAGGAACGTTCGGTTATCTGGCTCCGGAGTATTTCATGTACGGTAAGGTAAGTGACAAGATTGATGTCTATGCTTATGGTGTGGTACTCCTTGAACTTCTTTCTGGGAGAAAACCGATAAGTACCGAGTATCCGAAAGGACAAGAAAGCCTAGTCATGTGGGCAAGGCCAATTTTAATCGACGGGAAGGTGTCTCGGTTACTCGATCCTAACTTGGGAAGTAACTACAACAAGGACGAGATGGAGCGTGTCGTTTTAGCAGCTAGCCTTTGTATCAGACGCACTCCACGAGCTAGGCCTCCAATGAGCCATGTTCTAAAACTTCTCCAAGGCGACGTAGATATAACCAAGTGGGCAAGGCAACAGATCAATGCTGTAGAGGATTGCAACGCTCTAGACGATGAAGTATGTCCTCGATCCGATATTCAATCACATCTCAATGTTGCATTGCTCGACGTCGATGACGACTCGCTCTCCCTGAGCAGCATCGAGCAGAGTATCTCAATGGAGGACTATTTGCAAGGCAGGTGGAGCCGTTCATCAGGGTTCGACTAA 2124 45.48 MRLLQNGVAGEPLQVDSGRSVLVGMKLDSHSRELLTWALVKVAQPGDLVIALHVLGNDEIVNRDGKSSLLSLVKTFDSVLAVYEGFCNLKQVDLKLKICRGASARKILVREAKSYSASNLIVGTARKHHKIRSSSSVAKYCAKKLPKHCWVLAVHNGKVTFERAAVATGDCQGNKVESDLGIGKDSDQGFAKGVMDSSYKPNCSICGSESSSLVQSAVISSGDGDEHDESFAIVPVQKVEVASSSITKLIKESPEVQPGWPLLRHADQSGRRASSDKALAKQISVVQWAMRLPNRSASDPAALDCNSNTSGQAMVLVGSEPVTSSLSPNPSSIPKELEGFHDKYSSSCRLFSYQELVTATSNFLPQNLIGKGGSSQVFRGRLPDDNEVAVKILKPSEDVLNEFSVEIEIITSLSHKNIISLLGFCFEDSKFLLVYDFLSRGCLEDILHGNGKSSNAFGWSKRYNVAVGVAEALDHLHSDSQHVIHRDVKSSNVLLSDNFEPQLSDFGLAKRASKSSHVTCTDVAGTFGYLAPEYFMYGKVSDKIDVYAYGVVLLELLSGRKPISTEYPKGQESLVMWARPILIDGKVSRLLDPNLGSNYNKDEMERVVLAASLCIRRTPRARPPMSHVLKLLQGDVDITKWARQQINAVEDCNALDDEVCPRSDIQSHLNVALLDVDDDSLSLSSIEQSISMEDYLQGRWSRSSGFD 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17624119 17627579 + Cp4.1LG01g20790.1 Cpe01g02077 463390

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02077 707 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 19 155 - -
Cpe01g02077 707 ProSitePatterns Protein kinases ATP-binding region signature. 369 391 IPR017441 GO:0005524
Cpe01g02077 707 Pfam Protein kinase domain 367 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g02077 707 PANTHER - 199 690 - -
Cpe01g02077 707 PANTHER - 13 176 - -
Cpe01g02077 707 SUPERFAMILY Protein kinase-like (PK-like) 343 639 IPR011009 -
Cpe01g02077 707 Gene3D - 21 175 - -
Cpe01g02077 707 ProSiteProfiles Protein kinase domain profile. 363 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g02077 707 Gene3D Transferase(Phosphotransferase) domain 1 438 651 - -
Cpe01g02077 707 Gene3D Phosphorylase Kinase; domain 1 334 437 - -
Cpe01g02077 707 Pfam Universal stress protein family 19 151 IPR006016 -
Cpe01g02077 707 ProSitePatterns Serine/Threonine protein kinases active-site signature. 483 495 IPR008271 GO:0004672|GO:0006468
Cpe01g02077 707 PANTHER OS08G0249100 PROTEIN 199 690 - -
Cpe01g02077 707 PANTHER OS08G0249100 PROTEIN 13 176 - -
Cpe01g02077 707 SMART serkin_6 363 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02077 - - - csv:101203034 1093.57
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g02077 Cpe13g00644 CCT
Cpe01g02077 Cpe13g00644 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02077 Cpe-Chr1:17624119 Cpe05g01044 Cpe-Chr5:6907209 0 dispersed
Cpe01g02077 Cpe-Chr1:17624119 Cpe13g00644 Cpe-Chr13:6153030 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g209 . . . . . . . . Cmo04g02508 Cmo15g00658 . . . . . . . Bhi04g01860 . . . . . Lcy10g1259 Cla08g00627 . . . . . . . . Cone17ag0817 Cone20ag0422 . Csa04g01957 . Cme03g00489 Blo17g00166 Blo18g00172 . Bda13g01465 Bpe02g01658 . Bma01g00797 . . . . . . Car04g02316 Car15g00595 Cpe01g02077 . . . . . . . . . . . . . . . Lsi08g00467 . Chy03g00749 .
Vvi18g1149 . . . . . . . . Cmo04g02508 Cmo15g00658 . . . . . . Cpe13g00644 Bhi04g01860 . . . . . Lcy10g1259 Cla08g00627 . . . . . . . . Cone17ag0817 Cone20ag0422 . . . . . . . . . . . . . . . . . Car04g02316 . Cpe01g02077 . . . . . . . . . . . . . . . Lsi08g00467 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004130 2 1 2 2 1 1 2 1 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 1 1 1 1 0 3 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62174 PF00069 Pkinase 4.50E-44 CL0016 Cpe PK