Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02085 ATGGAGCGTCAAATCGAGACGCTTATTCGACTCATGATCGTAAACATACTCATCCTATCGTCACCGGTTTACGCATCTCAAGCCTTACTCGGCTGCCCCGATCGGTGTGGCGACTTGCAGATACCATATCCATTCGGAACAAGGGAAGGGTGTTACCTAAACAAAAATTTCTTGATTACCTGTAACACAACTCATTTCGATCCCCCGAGGCCATTTCTCCGGACCGGCAACATTCAAGTTACGAATATATCCATCTCCGGTGAGCTTCAAATCTTGCACTTTGGAGCCAAAGATTGCTACCCCAAAAACAATAGCGTCGACGCACGTCGGACCTCCGCCACTCTCAACTTATCCACGTTCACAGTTTCCAGTACCAAAAACAAGTTCACTGTTATCGGCTGTGATACATACGCTTTTCTTTCTGGCCAAATCGAGGGGCAAAGCTATAGAACAGCATGCGTGGCGTTGTGTGATAACATCACCACCGTAAGAGATGGCGCCTGCTCAGGTAATGGGTGCTGTCAGCTTGACATCCCTAGCGGCTTAAAGGGTTTGAGATATAGGGTGCGCAGCTTCGACAATCACACCGACGTCTTGAGCTTTAATCCATGTGGGTATGCCTTTGTGACCGAGGAAGACAAGTTTCATTTCTCGGCGGCTTATATTCGTGATTTCCCACAAAGGCAAGTTCCTGTTGTGCTTGATTGGGGTATTAGTAATACCACTTGCTCCACGGCTAACAAAAAAAGTAATTGTGTTTGTGGGCCCAATAGCATGATGGTTAACCCTCTGCCTGATGGATCTGAGTATCGTTGTGGGTGCTTGGATGGGTTTGAGGGTAATCCTTATCTTCCTCGAGGATGTCAAGATATTGATGAATGTAGGGATGAAAGGCTGAATGATTGCAAGTTTGAGTGTGTTAACACTGAAGGGAACTATACTTGTAATTGTCCGGAGGGTTTTAAAGGTGATGGACGACGTGGGGGTGAAGGTTGCACTCGAAGCTCCAAGTCTTTTGTTCAAGTTATCATTGGAGTATCCGTGGGGTTCACAGTCTTAGTAATTGGGAGTACATGGCTATACTTAGGCTACAGAAAATGGAAGCTCATCAAACTAAAAGAGAAGTTCTTCGAGGAAAATGGAGGCTTAATGCTTCAACGACATCTCTCTCAATGGAAATCATCCACAGACATGGTCACAATCTTCACCCAAGAGGAGCTAGACAAGGCCACAAACAAGTACGATGAAAGCGCCGTGATTGGAAAAGGCGGCTACGGCACAGTCTACAAAGGCATCTTACCCGACGGCTCAGTAGTAGCAATCAAAAAATCAAAATTAGTGGACCAATCCCAAACATCCCAATTCATCAATGAAGTCATTGTTCTTTCCCAAATCAACCATCGAAACGTGGAAGATCGGTTGGGGGAGGTTGTGGAGAAGGGAATGGCGAGGGAAGGGGAGTTTGGGCAGATAAAAGAAGTGGGGAAGGTGGCGAGGAAGTGCTTGAGAATTAGTGGGGAGGAGCGGCCGAGCATGAAGGAGGTGGCTATGGAGTTGGAGGGTTTGAGAGTGATGGTTGAACATGAGTGGGTTAATGAAGAAAATTTGGTGGCGGATGGAGCTTCGAATATGTTTGTGGTGAGTGGGAGTACAAATGTTGTGGATGATAGCATGAAAGTTCAGATTTTGCCACTGATTCATGATGGAAGATGA 1713 46.23 MERQIETLIRLMIVNILILSSPVYASQALLGCPDRCGDLQIPYPFGTREGCYLNKNFLITCNTTHFDPPRPFLRTGNIQVTNISISGELQILHFGAKDCYPKNNSVDARRTSATLNLSTFTVSSTKNKFTVIGCDTYAFLSGQIEGQSYRTACVALCDNITTVRDGACSGNGCCQLDIPSGLKGLRYRVRSFDNHTDVLSFNPCGYAFVTEEDKFHFSAAYIRDFPQRQVPVVLDWGISNTTCSTANKKSNCVCGPNSMMVNPLPDGSEYRCGCLDGFEGNPYLPRGCQDIDECRDERLNDCKFECVNTEGNYTCNCPEGFKGDGRRGGEGCTRSSKSFVQVIIGVSVGFTVLVIGSTWLYLGYRKWKLIKLKEKFFEENGGLMLQRHLSQWKSSTDMVTIFTQEELDKATNKYDESAVIGKGGYGTVYKGILPDGSVVAIKKSKLVDQSQTSQFINEVIVLSQINHRNVEDRLGEVVEKGMAREGEFGQIKEVGKVARKCLRISGEERPSMKEVAMELEGLRVMVEHEWVNEENLVADGASNMFVVSGSTNVVDDSMKVQILPLIHDGR 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17681591 17685014 + Cp4.1LG01g20800.1 Cpe01g02085 463398

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02085 570 CDD EGF_CA 290 324 - -
Cpe01g02085 570 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 471 541 IPR045274 GO:0007166
Cpe01g02085 570 ProSiteProfiles EGF-like domain profile. 290 324 IPR000742 -
Cpe01g02085 570 ProSitePatterns Calcium-binding EGF-like domain signature. 290 315 IPR018097 GO:0005509
Cpe01g02085 570 SMART egfca_6 290 333 IPR001881 GO:0005509
Cpe01g02085 570 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 306 317 IPR000152 -
Cpe01g02085 570 ProSiteProfiles Protein kinase domain profile. 414 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g02085 570 Pfam Wall-associated receptor kinase galacturonan-binding 32 87 IPR025287 GO:0030247
Cpe01g02085 570 Gene3D Phosphorylase Kinase; domain 1 386 483 - -
Cpe01g02085 570 SMART egf_5 293 333 IPR000742 -
Cpe01g02085 570 SMART egf_5 242 289 IPR000742 -
Cpe01g02085 570 Gene3D Plasmodium vivax P25 domain 234 339 - -
Cpe01g02085 570 ProSitePatterns Protein kinases ATP-binding region signature. 420 443 IPR017441 GO:0005524
Cpe01g02085 570 SUPERFAMILY EGF/Laminin 289 325 - -
Cpe01g02085 570 Pfam Protein tyrosine and serine/threonine kinase 418 480 IPR001245 GO:0004672|GO:0006468
Cpe01g02085 570 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
Cpe01g02085 570 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 26 470 IPR045274 GO:0007166
Cpe01g02085 570 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 26 470 - -
Cpe01g02085 570 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 471 541 - -
Cpe01g02085 570 Pfam Calcium-binding EGF domain 290 324 IPR001881 GO:0005509
Cpe01g02085 570 SUPERFAMILY Protein kinase-like (PK-like) 392 481 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02085 - - - cmos:111461403 940.258
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02083 Cpe-Chr1:17660087 Cpe01g02085 Cpe-Chr1:17681591 2.70E-18 dispersed
Cpe01g02085 Cpe-Chr1:17681591 Cpe13g00648 Cpe-Chr13:6169828 0 dispersed
Cpe01g02084 Cpe-Chr1:17678697 Cpe01g02085 Cpe-Chr1:17681591 3.50E-19 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g196 . . . . . . . . Cmo04g02519 Cmo15g00654 . . Car01g00906 . . . . Bhi04g01850 . . . . . Lcy10g1281 Cla08g00641 . . . . . . . Cone7ag1498 . . . . . Cme03g00459 Blo17g00163 . . Bda13g01455 Bpe02g01680 . . Bma02g00198 . Cmo01g01069 . . . . . Cpe01g02085 . . . . . . . . . . . . . . . Lsi08g00492 . Chy03g00552 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000104 3 8 3 4 2 5 1 5 5 8 7 5 10 11 3 9 5 3 5 6 7 5 5 3 4 16 0 1 1 10 160
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62176 PF07714 PK_Tyr_Ser-Thr 1.90E-05 CL0016 Cpe PK