Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02087 TCCGACCCATCGATCCGCTTTTCCATTCGGGTTGAAGCTGTCAAAAGATCTACTACGCACGTGTCGCAGAGTCGCAAACCGAGCGGGACCCATGGCCGGTGCTTTGCTCAGAAGAGTCTTCTTCTCCAGCAAGAAAACACGCGGTTTTACTGTGGAAATCGCGTCAGCCCTTTGCCGAAATCTTCCCCACGGAAACTTCGACAAAGTCAAACTCAGATACCAAAGGAAGTAACCAGAAGAGAAGTGATTCGGAGGGACATGTCTACCAATGCTGCTGCTTGCGCTGAGAGAGCAACAAATGATGGGCTTAGAGCTCCCGATTGGGCTATAAACATTGAGCTCTGTGATATCATCAACATGGATCCTAGGCAAGCAAAGGATGCATTGAAGATACTCAAGAAGCGACTGACTAGCAAGAATCCTAAAGTACAACTTCTAGCTCTCCATGCATTGGAGGCTCTAAGCAAAAATTGCAGTGATACCGTTTGTAAGCTGGTCGTGGAACGTAATATCCTGCACGAAATGCTTAAAATTGTGAAGAAGAAGCCTGATTTAAATGTACGGGACAAAATATTAGCTCTGGTAGATGCATGGCAAGCAGCATTTGCTGGCAACTCCAAGGGGAAGTGTCCACAGTACTATGCAGCCTACAATGAATTGAAGAATGCCGGGTTTCGATTTCCACCGAGAGAGGAGAATGTCGAGCACTTGCCAGAAATTCAAAATGCACAGGGACTAGCAGACGTTCTATGGGAAATGCTTGTCGCATTGGATCCTAAGACTCCGGAGGCTCTGAAGGAAGAAGTGATTGTAGATCTTGTTGATCAATGCCGTTCATACCAACGCCGTGTCATGGTACTTGTGAACGAGAACACAGATGAGGAACTGTTATGTCAAGGATTGGTGTTGAATGACAATCTGCAGCGTGTACTCAGCGACCACGACGACATTGCAAAAGGAACATTCATGATGGAAGCTAGAAGAACAGAACCTCCCATTCCATCGGTTCCATTTATGAACCCTGAGGATGATGGTTCGGAAGATGATTTTACACCGTTAGCTCGCAGGTCAACCAAAGATCACACTTTTGAAGAGGACAGCAAATTGGCAAACGGTCAATCATCTCGAGTTAGTCCAGATTCTTCACCCTTATCAAAGTCGACGACTAGTGTAGAAATGATCGATCATCTCAGTGACGCACACAAACCTCAACTGCCTCCAAGGATTGTAGAGCCACCATCTTATTCCCTTCCAATTTTCCCACCCTCGCCTCAAACTTCATCTCCCTTACCTTTCAACACTAGACAGCCTATGTTTGAGGAACCACCTCTGAGAAGCATATCCACGAATCCGCTTCCTGCAGCACATCGGGATACTCAATCTCCAAGCCTCCTCCCTCCCCCACCCTCGAGATATAACCAAAGACAACAATATTTTGAGCAACAAAAGTCAGTTACAGGAGGAGGCACTCTGCCCCATTTGAGCAATACCCGTGGTTCTTCGTATGACAACACGTCACTCAGTCCTTCCACCCCAACCAGATCTGCAGAGCATGAAGAAGCCCTTTTCAAAGATCTGGTGAAGTTTGCTCAGTTCAAGTTATCTTCATCGTCGCAATCCAACCGACCATTCAAAGTTAGACAAACAATCTGGATCAAACCCAACATTCATCAACAGAATCCAAACAAGCCTGAGCCCTCAAGTGTAATGATAAGAACAACTCCCACCAAACCCGAATCGATCTCCGATGAACAAAAATGCAGCAATGCGAGAACCCACATCAACAAAAATCAAATAAATGAAGAAGAAGAAGAAGAAAGATTACCTCAGAGACGAGAGTATTGTAAGAAGCCCGAGTGGATCGAAGGGAAGAAAACAGAACCGCAGGCTTGTTTCCGAGCACTAATT 1908 45.91 SDPSIRFSIRVEAVKRSTTHVSQSRKPSGTHGRCFAQKSLLLQQENTRFYCGNRVSPLPKSSPRKLRQSQTQIPKEVTRREVIRRDMSTNAAACAERATNDGLRAPDWAINIELCDIINMDPRQAKDALKILKKRLTSKNPKVQLLALHALEALSKNCSDTVCKLVVERNILHEMLKIVKKKPDLNVRDKILALVDAWQAAFAGNSKGKCPQYYAAYNELKNAGFRFPPREENVEHLPEIQNAQGLADVLWEMLVALDPKTPEALKEEVIVDLVDQCRSYQRRVMVLVNENTDEELLCQGLVLNDNLQRVLSDHDDIAKGTFMMEARRTEPPIPSVPFMNPEDDGSEDDFTPLARRSTKDHTFEEDSKLANGQSSRVSPDSSPLSKSTTSVEMIDHLSDAHKPQLPPRIVEPPSYSLPIFPPSPQTSSPLPFNTRQPMFEEPPLRSISTNPLPAAHRDTQSPSLLPPPPSRYNQRQQYFEQQKSVTGGGTLPHLSNTRGSSYDNTSLSPSTPTRSAEHEEALFKDLVKFAQFKLSSSSQSNRPFKVRQTIWIKPNIHQQNPNKPEPSSVMIRTTPTKPESISDEQKCSNARTHINKNQINEEEEEERLPQRREYCKKPEWIEGKKTEPQACFRALI 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17686384 17693598 - Cp4.1LG01g20870.1 Cpe01g02087 463400

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02087 636 Gene3D - 234 324 IPR038425 -
Cpe01g02087 636 SUPERFAMILY GAT-like domain 230 320 - -
Cpe01g02087 636 ProSiteProfiles GAT domain profile. 231 319 IPR004152 GO:0035091|GO:0043130
Cpe01g02087 636 CDD VHS 96 222 - -
Cpe01g02087 636 MobiDBLite consensus disorder prediction 54 74 - -
Cpe01g02087 636 SUPERFAMILY ENTH/VHS domain 94 229 IPR008942 -
Cpe01g02087 636 MobiDBLite consensus disorder prediction 368 394 - -
Cpe01g02087 636 MobiDBLite consensus disorder prediction 348 367 - -
Cpe01g02087 636 PANTHER TOM1-LIKE PROTEIN 237 543 IPR044836 GO:0035091|GO:0043130|GO:0043328
Cpe01g02087 636 PANTHER TOM1-LIKE PROTEIN 87 236 IPR044836 GO:0035091|GO:0043130|GO:0043328
Cpe01g02087 636 SMART VHS_2 91 224 IPR002014 GO:0035091|GO:0043130
Cpe01g02087 636 MobiDBLite consensus disorder prediction 406 428 - -
Cpe01g02087 636 MobiDBLite consensus disorder prediction 327 518 - -
Cpe01g02087 636 CDD GAT_GGA_like_plant 239 317 - -
Cpe01g02087 636 ProSiteProfiles VHS domain profile. 98 228 IPR002014 GO:0035091|GO:0043130
Cpe01g02087 636 Pfam VHS domain 95 223 IPR002014 GO:0035091|GO:0043130
Cpe01g02087 636 Pfam GAT domain 246 320 IPR004152 GO:0035091|GO:0043130
Cpe01g02087 636 Gene3D - 86 233 IPR008942 -
Cpe01g02087 636 MobiDBLite consensus disorder prediction 470 515 - -
Cpe01g02087 636 PANTHER TOM1-LIKE PROTEIN 4 237 543 - -
Cpe01g02087 636 PANTHER TOM1-LIKE PROTEIN 4 87 236 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02087 - - - csv:101219096 639.417
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g02087 Cpe02g00872 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02087 Cpe-Chr1:17686384 Cpe02g00872 Cpe-Chr2:5861472 6.46E-120 dispersed
Cpe01g02087 Cpe-Chr1:17686384 Cpe13g00651 Cpe-Chr13:6181538 0 wgd
Cpe01g02087 Cpe-Chr1:17686384 Cpe06g00862 Cpe-Chr6:5614640 1.26E-140 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g185 Blo01g01314 Blo12g01115 Bda01g00684 . Bpe02g00621 Bpe04g00015 Bma04g00022 Bma01g02098 . Cmo15g00650 . . . . . . . Bhi04g01843 Tan11g1214 . . . . . Cla08g00646 Cam08g1070 Cec08g0655 Cco08g0766 Clacu08g0775 . Cre08g0583 Cone4ag1441 . Cone17ag0809 Cone20ag0414 . Csa04g01732 . Cme03g00439 . . . . . . . . . . . . . Car04g02322 Car15g00588 Cpe01g02087 Cpe02g00872 . . . . . . . . . . . . . . Lsi08g00505 . Chy03g00557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001242 1 5 2 2 2 2 4 2 2 3 2 2 4 2 2 4 2 4 4 2 2 2 1 2 2 3 2 5 3 1 76