Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02094 ATGGCGCTCGACAACTGTATACAACTGAGCACCGCCGCCGCCATGTATGGCACCACTTCCATCCCCAAATCTCACCCATTCTCTTCCACTTTCCACCAAAAGCCAACTCTCTCCCTTCAACGCTTCAACAAATTCCCCACTTCCACGGCGCGATTCAAGTCCTTCTCTCCTTCCACCTCCGTCTCCACTTTCGGCAAATCCCGCTCCGTCACCTGTAAAGCTCGCGGCGCCGTTGACGACGTGAAGGAGGTTACAGAGTCGAGCTGGAATGAGTTGGTGGTGGAGAGTGAAAAGACGGTGCTGGTGGAATTTTGGGCGCCGTGGTGTGGACCGTGCAAGATGATTGAGCCAGTGATTAGGGAATTGGCGCAGGATTATGCAGGGAAAATCGTGTGTTTGAAGCTCAATACAGACGCCAGCCCAAATGTAGCCTCGAAATATGGGATTAGAAGCATTCCCACAGTTCTGTTCTTCAAGAATGGACAGAAGAGAGAGGGCGTCATTGGGGCTGTACCCAAATCCACCTTGTCCGCCTCCATTGATAAGTATCTCGAGGTTTGA 561 52.05 MALDNCIQLSTAAAMYGTTSIPKSHPFSSTFHQKPTLSLQRFNKFPTSTARFKSFSPSTSVSTFGKSRSVTCKARGAVDDVKEVTESSWNELVVESEKTVLVEFWAPWCGPCKMIEPVIRELAQDYAGKIVCLKLNTDASPNVASKYGIRSIPTVLFFKNGQKREGVIGAVPKSTLSASIDKYLEV 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17732502 17735332 + Cp4.1LG01g20890.1 Cpe01g02094 463407

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02094 186 CDD TRX_family 87 181 - -
Cpe01g02094 186 Gene3D Glutaredoxin 80 185 - -
Cpe01g02094 186 ProSiteProfiles Thioredoxin domain profile. 46 185 IPR013766 -
Cpe01g02094 186 TIGRFAM thioredoxin: thioredoxin 85 182 IPR005746 GO:0015035
Cpe01g02094 186 PANTHER THIOREDOXIN M-TYPE PROTEIN 36 184 - -
Cpe01g02094 186 ProSitePatterns Thioredoxin family active site. 101 119 IPR017937 -
Cpe01g02094 186 SUPERFAMILY Thioredoxin-like 72 185 IPR036249 -
Cpe01g02094 186 PANTHER GEO12009P1 36 184 - -
Cpe01g02094 186 PRINTS Thioredoxin family signature 100 108 - -
Cpe01g02094 186 PRINTS Thioredoxin family signature 108 117 - -
Cpe01g02094 186 PRINTS Thioredoxin family signature 148 159 - -
Cpe01g02094 186 Pfam Thioredoxin 81 182 IPR013766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02094 K03671 trxA; thioredoxin 1 - csv:101218257 266.159
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g02094 Cpe13g00660 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00825 Cpe-Chr1:4906003 Cpe01g02094 Cpe-Chr1:17732502 4.45E-42 dispersed
Cpe01g02094 Cpe-Chr1:17732502 Cpe13g00660 Cpe-Chr13:6223255 2.17E-90 dispersed
Cpe07g00105 Cpe-Chr7:542663 Cpe01g02094 Cpe-Chr1:17732502 1.43E-12 dispersed
Cpe01g02094 Cpe-Chr1:17732502 Cpe14g00681 Cpe-Chr14:4473832 7.46E-47 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1199 Blo01g01324 Blo12g01109 . Bda03g00029 . Bpe04g00019 . . Cmo04g02534 Cmo15g00640 . . . . Sed11g1319 . Cpe13g00660 Bhi04g01828 Tan11g1203 Cmetu01g1872 . Hepe02g2753 . Lcy10g1305 Cla08g00654 Cam08g1084 Cec08g0670 Cco08g0779 Clacu08g0788 . Cre08g0593 . . Cone17ag0803 Cone20ag0407 . . . Cme03g00422 . . . . . . . . . . . . . Car04g02331 Car15g00581 Cpe01g02094 . . . . . . . . . . . . . . . Lsi08g00514 . Chy03g00578 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008381 1 1 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35