Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02095 ATGGTAACTACGGGGCCACCTACTCCTATGGGTGGTGGTGCACAGTCTGTTTCACCCTCACTTCTGCGATCTGATTCTGGATTGCTGGGAGTTCAAGGTGGTCTGCTGCCTTCACAGGCTTTTTCTTCACTCGTGTCGCCCCGCAATCAGTTCAATAGTATGAATATGCTTGGTAATATGTCCAATGTGTCATCTCTCCTTAATCAATCATTTGGAAATGGGGCTCCTAATTCTGGACTTCCATGTCCTGGTGGTGTTGACACCGGAGCAGAGCCAGACCCTCTTTCGGGTGTTGGCAATGGAATGAACTTTAATAATCCTTCATCATCTTTTGTAGCATCAAGTATGACAAACCCCGTATCGTCTGTCCAAGGGCAGAATCCACAATTTTCCAACCTTTCTAGCAGCCAGTTGTTATCAGATCAGCAGCAGTCACAACAACTTGAACCCCAGAACTTCCATCTAAGTCAACAGTCTATGGAACAGTTTTCAGCACTTCAGAGCAATCAACAATCACAATTTCAAGCAATTCGAGGGTTGACTGGTGTTGGACCCGTAAAGTTGGAGCCTCAAGACAACAACATAGATTTCTGGAGAAAATTTGTTAACGAGTACTTTGCACCTCATGCCAAAAAGAAGTGGTGCGTTTCCATGTATGGAAGTGGGCGACAAACAACTGGAGTTTTTCCTCAGGATGCATGGCATTGTGAAATATGCAAACGCAAGCCTGGGCGTGGCTTTGAAGCAACTGCTGAAGTTCTTCCCAGGCTTTTTAAGATCAAGTATGAAAGTGGAACTATGGAGGAGCTACTTTATCTTGACATGCCCCGTGAATATCATAATGCTTCTGGTGAGATCGTCCTGGATTATGCAAAAGCAATACAGGAAAGTGTTTTTGAGCAACTTCGCGTTGTTCGGGATGGCCAACTTCGAATTGTTTTTTCTCCAGACCTTAAGATATGTTCATGGGAATTCTGTGCTCGACGCCATGAAGAACTTATTCCGAGGAGATTATTGATACCTCAGGTTAGTCATCTTGGGGCAGCAGCTCAAAAGTACCAGTCTGCCATTCAAAGCGCATCATCCAATTTATCAACTCCTGAATTGCAAAATAATTGTAACATGTTTGTGGCTTCAGCGCGGCAATTAGCTAAAGCCTTGGAAGTTCCGCTGGTAAATGACTTGGGATATACAAAGAGATATGTACGTTGTCTTCAGATATCCGAAGTGGTTAATAGCATGAAGGACTTGATTGATTACAGCAAAGAAACAGGGATCGGTCCAATGGATAGTCTAGCCAAGTTTCCTCGGAGGTCTAGTTCGTCATCAGGGCTTACAACACAAGCTCAAGGTTCTGATGAGCAGCAGCAGCAGCAACAACAACAATCATCCATAGCCCAGCGCCCAAATAATAATCAGAGTTTTGTTCAGGCTTCTGCAGTGCAGATTTTAGCTAGCAATGGTGTGACCAGTGTAAATAGCAACGCCAACCAACCTTCGACATCAAACTCAGCAAGCACCATTGTCGGGCTTCTTCACCAGAATTCTATGAACTCCAGACAGCAGAACACTATGGCTAAACCTAGTAACTCAAATGGGGGAAGTTCTGTTCAGATTCCGTCCCCGGGTTCATCCAGTACGATTCCACCTACACAACCAAACCCTTCTACATTCCAGCCGCCAACTCCCTCGTCATCCAACAATCCTTCACACCCAACGCATACAGCTTCAAAGAGTTCCAATCAGATGAGTACTGCTAATTCTCCGGCAAACATCTCTATGCAACAATCTGCTTTATCTGGGGATGCTGATCCTAGTGATACACAGTCCTCCGTACAAAAGATCTTACAAGAGATGATGATGAACAATCAAATGAATGGCTCGTCTAGTCTGGTTGGCATGGGTTCGGTGGTCAATGATATGAAAAATGTGAATGGGATCTTACCTACAGGCAATACAGGTGTCAACAATGGGGGAAATTGTATAGGGGGAAACGGAACAACAACCAACGGTGGCTCGGGCATGGGAGGAGGTGGATATGGATCAATGGGGAGTGGGCTTGGGCAGCCTGCCATGGTTAATGGAATGAGAAATGCAATGGGAAACAACTCCATTATGAACAGACGAATAGGAATGGCGTCGCTCGCTCTAGAACAAAGCATGAATGGTCAACAGCAAGATTTGGGAAACCACCTTCTAAGCGGACTCGGAGCTGTAAACAGCTTAAGTAATCTCCAATACGACTGGAAGCCATTCCCATGA 2262 45.18 MVTTGPPTPMGGGAQSVSPSLLRSDSGLLGVQGGLLPSQAFSSLVSPRNQFNSMNMLGNMSNVSSLLNQSFGNGAPNSGLPCPGGVDTGAEPDPLSGVGNGMNFNNPSSSFVASSMTNPVSSVQGQNPQFSNLSSSQLLSDQQQSQQLEPQNFHLSQQSMEQFSALQSNQQSQFQAIRGLTGVGPVKLEPQDNNIDFWRKFVNEYFAPHAKKKWCVSMYGSGRQTTGVFPQDAWHCEICKRKPGRGFEATAEVLPRLFKIKYESGTMEELLYLDMPREYHNASGEIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSHLGAAAQKYQSAIQSASSNLSTPELQNNCNMFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSKETGIGPMDSLAKFPRRSSSSSGLTTQAQGSDEQQQQQQQQSSIAQRPNNNQSFVQASAVQILASNGVTSVNSNANQPSTSNSASTIVGLLHQNSMNSRQQNTMAKPSNSNGGSSVQIPSPGSSSTIPPTQPNPSTFQPPTPSSSNNPSHPTHTASKSSNQMSTANSPANISMQQSALSGDADPSDTQSSVQKILQEMMMNNQMNGSSSLVGMGSVVNDMKNVNGILPTGNTGVNNGGNCIGGNGTTTNGGSGMGGGGYGSMGSGLGQPAMVNGMRNAMGNNSIMNRRIGMASLALEQSMNGQQQDLGNHLLSGLGAVNSLSNLQYDWKPFP 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17732502 17740635 - Cp4.1LG01g21000.1 Cpe01g02095 463408

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02095 753 MobiDBLite consensus disorder prediction 428 470 - -
Cpe01g02095 753 MobiDBLite consensus disorder prediction 546 567 - -
Cpe01g02095 753 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 190 752 - -
Cpe01g02095 753 PANTHER LIM DOMAIN-BINDING PROTEIN 1 194 IPR029005 -
Cpe01g02095 753 MobiDBLite consensus disorder prediction 519 588 - -
Cpe01g02095 753 Pfam LIM-domain binding protein 190 432 IPR029005 -
Cpe01g02095 753 PANTHER LIM DOMAIN-BINDING PROTEIN 190 752 IPR029005 -
Cpe01g02095 753 MobiDBLite consensus disorder prediction 109 149 - -
Cpe01g02095 753 MobiDBLite consensus disorder prediction 435 470 - -
Cpe01g02095 753 MobiDBLite consensus disorder prediction 1 21 - -
Cpe01g02095 753 MobiDBLite consensus disorder prediction 568 588 - -
Cpe01g02095 753 MobiDBLite consensus disorder prediction 519 545 - -
Cpe01g02095 753 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 1 194 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02095 - - - csv:101218018 850.506
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02095 Cpe-Chr1:17732502 Cpe02g00864 Cpe-Chr2:5779985 3.06E-41 dispersed
Cpe06g00870 Cpe-Chr6:5688671 Cpe01g02095 Cpe-Chr1:17732502 0 transposed
Cpe01g02095 Cpe-Chr1:17732502 Cpe13g00659 Cpe-Chr13:6223255 3.73E-90 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1200 . . . . . . . . Cmo04g02535 Cmo15g00639 . . . . . . . Bhi04g02144 . . . . . . Cla08g00655 Cam08g1085 Cec08g0671 Cco08g0780 Clacu08g0789 . Cre08g0594 Cone4ag1452 Cone7ag1480 Cone17ag0802 Cone20ag0406 . . . Cme03g00421 Blo17g00225 Blo18g00225 . Bda13g01540 Bpe02g01598 Bpe14g00324 Bma01g00876 . . . . . . Car04g02333 Car15g00580 Cpe01g02095 . . . . . . . . . . . . . . . Lsi08g00515 . Chy03g00579 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001301 2 5 2 1 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 1 2 2 2 2 7 3 2 75