Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02098 ATGCCTCGTCGTAGGGACGACGATGAAGATGACGATATTGATGCTGATGATGAAGAGTATGAGGATGAGATGGAGCAGCCTTTGGATGACGAGGAGGAAGAGGAAGATCGCTCGAGTAGGAAGCGGAGGAGATCGAATTTTATAGACGATGTTGCTGAGGAGGATGAGGATGAGGAGGAAGAAGAGGAGGATGATGAGGATTTTGGTGGCGGTGCTAGGCGGCGGCGTGCTAAGAGGCCTAGTGGTTCTCAGTTTTTGGATATTGAGGCGGAGGTCGATAGCGAGGATGATGAAGAGGAGGACGATGGAGAGGACGACTTCATAGTTGATGGTGCAACTGATATACCCGATGAAGATGAAAATAGAAGGATGCATCGCCGCCCATTGCTACCCCGAGAGGATGAACAGGAGGATGTTGAAGCACTTGAAAGAAGGATTCAAGCTAGATATGCAAGGTCAAATCATATGGAATATGACGAGGAGACAACTGAAGTGGAGCAGCAAGCGCTTCTACCTTCTGTAAGGGATCCAAAGTTGTGGATGGTTAAATGCGCGATTGGCCATGAGAGAGAGGCTGCTGTTTGTCTAATGCAAAAATGCATTGATAGAGGGCCTGAAATGCAAATAAGATCTGCAATTGCTCTTGATCATTTGAAGAACTTTATATATATTGAAGCGGACAAAGAAGCCCATGTTAGAGAGGCTTGTAAAGGTCTACGCAACATATATTCACAAAAAGTAATGCTTGTTCCAATTAAAGAGATGACTGATGTTCTCTCTGTTGAAAGCAAAGCAATTGATCTTTCCAGAGATACGTGGGTCAGGATGAAGATTGGGACATACAAGGGGGATCTTGCCAAGGTGGTGGATGTTGATAATGTGCGGCAGAGGGTTACTGTGAAACTTATTCCTCGGATAGACCTACAGGCTCTTGCAAACAAATTGGAAGGTAGAGAAGTTGCTAAGAAGAAGGCATTTGTTCCTCCACCCCGTTTTATGAATATTGATGAAGCTAGAGAGTTGCATATCCGTGTAGAGCGCAGACGCGATCCCATTACTGGAGAATACTTTGAGAACATAGGTGGCATGTTTTTCAAAGATGGTTTCTTGTACAAAACAGTGTCCATGAAGTCAATAAGTGCCCAAAACATAAAACCAACTTTTGATGAACTTGAGAAATTTCGAAAGCCTGGGGAAAATGGTGATGGGGATATTGCTAGTTTGTCTACCTTGTTTGCAAACCGAAAGAAAGGGCACTTTATGAAGGGTGATGCTGTCATTGTTGTCAAGGGGGATCTCAAGAATCTGAAAGGATGGGTAGAGAAAGTAGAGGAAGAGAATGTCCACATCAGACCAGAAATGAAAGGCCTTCCTAAAACTCTTGCTGTGAATGAAAGAGAACTTTGCAAGTACTTTGAGCCTGGAAATCATGTAAAAGTTGTAACGGGGACTCAGGAGGGGGCTACTGGTATGGTTGTGAAGGTGGAGCAGCATGTGCTTATTATACTGTCTGATACAACCAAGGAACACATCCGGGTATTTGCTGATGATGTTGTTGAGAGCTCTGAGGTAACAACTGGTGTGACGAAAATTGGGGATTATGAACTTCATGATCTTGTGTTATTGGATAATATGAGCTTTGGCGTGATTATACGTGTAGAAAGTGAGGCTTTTCAGGTTCTTAAGGGTATTCCAGATAGACCTGAGGTTGATATCGTTAAGTTGAGGGAAATAAAAAGTAAGATTGACAAGAAAATCAGTGTTCAAGATCGACACAATAACACAATTTCCGCCAAAGACATTGTCAGGATTCTTGAAGGTCCTTGTAAGGGAAAACAAGGTCCAGTGGAGCACATATACAGAGGTGTGCTGTTCATTTATGATCGCCATCACTTGGAACATGCTGGCTTTATATGTGTTAAATCACATTCTTGTGTTGTTGTGGGTGGATCCCGAACTAATGGAAATAGAAATGGTAATTCGTACTCTAGGCTTGCTGGCCTTGGGGCTCCACCTCGTTTTCCTCAGTCGCCTAAGAGATTTTCCAGAGGAGGTCCCCCGAATGATTCTGGTGGAAGAAATAGAGGTGGAAGAGGGCATCATGATGGTTTGGTTGGATCAACAGTGAAAGTTCGGCAGGGTCCTTACAAGGGTTACCGTGGGCGTGTTGTTGAAATAAAAGGCCAACTGGTTCGAGTAGAGCTTGAGTCTCAAATGAAAGTTGTCACAGGCATTGAAATATTTTCCATTAACACCATAATACTTGTTTTATTTGCAGTTGACCGCAATTTTATCTCAGATAATGTGGCTGTTTCAACCCCCTATCGTGATACATCTAGATATGGTATGGGAAGTGAAACTCCCATGCATCCTTCTCGAACTCCTCTGCATCCGTACATGACCCCAATGAGAGATATGGGAACAACGCCAAGTCATGATGGCATGAGGACACCAATGCGAAATCGAGCATGGAATCCATATGCACCCATGAGTCCGTCAAGGGAGAGCTGGGAGGAAGGGAACCCTGCAACTTGGGGAGCGAGTCCACAGTACCAGCCAGGAAGCCCTCCTTCACGAACTTACGAAGCTCCAACTCCTGGTACTGGTTGGGCCAACACTCCTGGTGGCAGTTACAGTGATGCCGGTACCCCTCGGGATAGTGGTTCAGCCTATGCAAATGCCCCGAGCCCATACTTGCCTTCAACTCCTGGTGGACAGCCCATGACACCAAATTCAGCATCCTATCTTCCTGGTACTCCTGGCGGGCAGCCAATGACACCAGGCACAGGTGGTCTGGATATGATGTCTCCTGTTATAGGTGGTGATGCCGACGGACCATGGTACATGCCAGACATATTGGTCAATGTCCGGAGAGGAGATGAGCTGATCATGGGAGTAATCCGTGAGGTGCTTCCGGATGGCTCATGTAGGGTAGGTCTTGGGTCAAGTGGAAATGGTGAAACGATAACAGCCATTTCTAGCGACATAGAAGCCATTGTTCCTAGGAAGTCGGACAAGATCAAGATAATGGGTGGTGCACTGCGTGGCGCCACTGGGAAGTTGATTGGTGTGGATGGCACCGATGGAATAGTGAAGGTAGACGACACTCTTGATGTTAAGATTTTGGATTTAGTTATTCTTGCAAAACTAGCCCAACCATAA 3162 45.48 MPRRRDDDEDDDIDADDEEYEDEMEQPLDDEEEEEDRSSRKRRRSNFIDDVAEEDEDEEEEEEDDEDFGGGARRRRAKRPSGSQFLDIEAEVDSEDDEEEDDGEDDFIVDGATDIPDEDENRRMHRRPLLPREDEQEDVEALERRIQARYARSNHMEYDEETTEVEQQALLPSVRDPKLWMVKCAIGHEREAAVCLMQKCIDRGPEMQIRSAIALDHLKNFIYIEADKEAHVREACKGLRNIYSQKVMLVPIKEMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKKKAFVPPPRFMNIDEARELHIRVERRRDPITGEYFENIGGMFFKDGFLYKTVSMKSISAQNIKPTFDELEKFRKPGENGDGDIASLSTLFANRKKGHFMKGDAVIVVKGDLKNLKGWVEKVEEENVHIRPEMKGLPKTLAVNERELCKYFEPGNHVKVVTGTQEGATGMVVKVEQHVLIILSDTTKEHIRVFADDVVESSEVTTGVTKIGDYELHDLVLLDNMSFGVIIRVESEAFQVLKGIPDRPEVDIVKLREIKSKIDKKISVQDRHNNTISAKDIVRILEGPCKGKQGPVEHIYRGVLFIYDRHHLEHAGFICVKSHSCVVVGGSRTNGNRNGNSYSRLAGLGAPPRFPQSPKRFSRGGPPNDSGGRNRGGRGHHDGLVGSTVKVRQGPYKGYRGRVVEIKGQLVRVELESQMKVVTGIEIFSINTIILVLFAVDRNFISDNVAVSTPYRDTSRYGMGSETPMHPSRTPLHPYMTPMRDMGTTPSHDGMRTPMRNRAWNPYAPMSPSRESWEEGNPATWGASPQYQPGSPPSRTYEAPTPGTGWANTPGGSYSDAGTPRDSGSAYANAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDMMSPVIGGDADGPWYMPDILVNVRRGDELIMGVIREVLPDGSCRVGLGSSGNGETITAISSDIEAIVPRKSDKIKIMGGALRGATGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLAQP 1053
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17762626 17772823 + Cp4.1LG01g20900.1 Cpe01g02098 463411

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02098 1053 MobiDBLite consensus disorder prediction 656 707 - -
Cpe01g02098 1053 MobiDBLite consensus disorder prediction 905 919 - -
Cpe01g02098 1053 CDD NGN_Euk 178 260 IPR039385 -
Cpe01g02098 1053 Gene3D - 474 523 IPR014722 -
Cpe01g02098 1053 SUPERFAMILY Translation proteins SH3-like domain 463 522 IPR008991 -
Cpe01g02098 1053 Pfam Spt5 transcription elongation factor, acidic N-terminal 85 172 IPR022581 -
Cpe01g02098 1053 Gene3D - 688 744 IPR014722 -
Cpe01g02098 1053 Pfam Early transcription elongation factor of RNA pol II, NGN section 178 259 IPR005100 -
Cpe01g02098 1053 CDD KOW_Spt5_3 471 521 IPR041976 -
Cpe01g02098 1053 MobiDBLite consensus disorder prediction 809 927 - -
Cpe01g02098 1053 CDD KOW_Spt5_2 420 470 IPR041975 -
Cpe01g02098 1053 SMART kow_9 1000 1027 IPR005824 -
Cpe01g02098 1053 SMART kow_9 595 622 IPR005824 -
Cpe01g02098 1053 SMART kow_9 267 294 IPR005824 -
Cpe01g02098 1053 SMART kow_9 702 729 IPR005824 -
Cpe01g02098 1053 SMART kow_9 419 446 IPR005824 -
Cpe01g02098 1053 SMART kow_9 471 498 IPR005824 -
Cpe01g02098 1053 MobiDBLite consensus disorder prediction 89 114 - -
Cpe01g02098 1053 Coils Coil 132 152 - -
Cpe01g02098 1053 Gene3D - 414 471 IPR014722 -
Cpe01g02098 1053 PIRSF Spt5 2 1053 IPR017071 GO:0006357|GO:0032784
Cpe01g02098 1053 CDD KOW_Spt5_4 599 641 IPR041977 -
Cpe01g02098 1053 ProSitePatterns Ribosomal protein L24 signature. 423 440 IPR005825 GO:0003735|GO:0005840|GO:0006412
Cpe01g02098 1053 CDD KOW_Spt5_1 271 308 IPR041973 -
Cpe01g02098 1053 MobiDBLite consensus disorder prediction 9 33 - -
Cpe01g02098 1053 CDD KOW_Spt5_5 700 743 IPR041978 -
Cpe01g02098 1053 Gene3D - 158 260 IPR036735 GO:0006355
Cpe01g02098 1053 MobiDBLite consensus disorder prediction 51 67 - -
Cpe01g02098 1053 MobiDBLite consensus disorder prediction 1 139 - -
Cpe01g02098 1053 CDD KOW_Spt5_6 994 1051 IPR041980 -
Cpe01g02098 1053 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT5 27 1051 - -
Cpe01g02098 1053 MobiDBLite consensus disorder prediction 843 896 - -
Cpe01g02098 1053 SMART nusgn_4 176 262 IPR006645 GO:0140673
Cpe01g02098 1053 Pfam KOW motif 474 501 IPR005824 -
Cpe01g02098 1053 Pfam KOW motif 705 735 IPR005824 -
Cpe01g02098 1053 MobiDBLite consensus disorder prediction 34 50 - -
Cpe01g02098 1053 PANTHER SUPPRESSOR OF TY 5 27 1051 IPR039659 GO:0006357|GO:0032784
Cpe01g02098 1053 MobiDBLite consensus disorder prediction 115 139 - -
Cpe01g02098 1053 Gene3D - 267 309 IPR014722 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02098 K15172 SUPT5H, SPT5; transcription elongation factor SPT5 - csv:101204562 1791.55
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g02098 Cpe13g00663 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02098 Cpe-Chr1:17762626 Cpe01g02213 Cpe-Chr1:18820444 8.52E-24 dispersed
Cpe01g02098 Cpe-Chr1:17762626 Cpe13g00663 Cpe-Chr13:6249985 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1207 Blo01g01326 . Bda01g00691 . Bpe02g00614 . . Bma01g02111 Cmo04g02539 Cmo15g00634 . . . . Sed01g2883 . Cpe13g00663 Bhi04g01823 Tan11g1195 Cmetu03g0776 . Hepe02g2759 . Lcy10g1309 Cla08g00661 Cam08g1091 Cec08g0676 Cco08g0785 Clacu08g0796 . Cre08g0599 . . . . . . . Cme03g00404 . . . . . . . . . . . . . Car04g02336 Car15g00576 Cpe01g02098 . . . . . . . . . . . . . . . Lsi08g00519 . Chy03g00585 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005509 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 2 3 1 39