Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02108 TTGCAGGCATTAATTACATTGAAGAAGGGTGCTCAACTGCTTAAATATGGTCGTAAAGGAAAGCCAAAGTTCTGTCCATTCAGGCTTTCTAGTGATGAATCTTCCTTGATCTGGATTTCAAGTAAAGGCGAAAGAAGTTTGAAGTTAGCTTCAATCTCACAAATTGTTCCTGGACAAAGAACTGCTGTCTTTGAAAGATATCTTCGTCCTGAAAAGGATTACTTATCATTCTCCCTTATATACAACAACGGGAAGCGATCCCTTGATCTGATTTGTAAGGATAAAGTTGAGGCAGAGGCTTGGATTGCAGGCCTGAAAGCTTTAATAGCATCTGGTCAAGGTGGACGTTCCAAGATTGATGGCTGGAGTGATGGAGGCCTCTATCTTGATGACAGTTGTGAATTGACTTCAAATAGCCCAAGTGACAGTTCACACAGTGTGAATAGAGATAATAGCTCTCCAGAAGTTTTTGTTAGTCTCAACGAAAATAAATCTCTGAAGACTTCTCGGCCTGAAAATTACATTGCAAACTCTGAAAGGGCTCATGTATCATTAAACCAAACAAGCATGCAAGTGAAGGGGTCTAGTTCTGATGTTATGCGTGTTAGTGTTTCAAGTGCTCCCAGCACCTCTAGTCATGGGTCTGCACCAGATGACTGTGATGCTCTAGGTGATGTATACATATGGGGTGAGATTGTTGGTGACAATGTTGTGAAGATTGGGGCTGAAAAAAATAGTAGTTATGTGACCTTGAGGACAGATGTACTTCTGCCAAGACCTTTGGAGTCTAACGTTGTTCTAGACATACACCATATAGCCTGTGGGGTCAGGCATGCTGCTTTGGTGACAAGGCAAGGGGAAGTTTTTACATGGGGAGAGGAATCTGGAGGCCGCCTTGGCCATGGTGTGGTGAAGGATGTAAGTCAACCTCGTATGATTGAATCTTTAGCAGCTAGTAGTATTGATTTTGTTGCGTGTGGAGAGTTCCACACATGTGCTGTTACAATGACCGGGGAACTTTATACATGGGGTGATGGTACCCATAATGCGGGGCTTCTTGGTCATGGCAGTGATGTCAGCCACTGGATACCAAAGAGAGTCTCTGGTCCACTTGAAGGACTTCAAATTGCTTCAGTGACATGTGGTCCATGGCATACAGCTTTGGTAACATCGATGGGTCAGCTTTTCACATTTGGTGATGGAACATTTGGTGCACTGGGCCATGGAGACCGAGAAAATATTTCATATCCAAAGGAAGTGGAATCCTTATCAGGCCTGAGGACAATTGCCGTTGCATGTGGGGTGTGGCATACTTCTGCTGTAGTTGAAGTTATTGTGACACAATCTAGTGCGAGCATTTCATCTGGAAAACTGTTTACGTGGGGTGATGGAGATAAAAATCGTCTGGGACATGGAGATAAGGAACCCAGGCTTAAACCCACATGTGTGCCAGCACTAATTGATTATGATTTTCACAAAATTGCTTGTGGTCACAGCCTTACTGTTGGTTTGACCACTTCAGGACAAGTTTTCTCAATGGGAAGTACTGTTTATGGCCAACTTGGGAATCCCAGTGCAGATGGAAAGATACCTTGCTTGGTAGAGGATAAGCTTTTTGGGGAATCCGTTGAAGAAGTTTCATGCGGTGCATATCATGTGGTGGTATTAACATCAAAAAATGAAGTTTATACATGGGGAAAGGGCGCAAATGGTAGATTGGGCCATGGTGATGTTGAAGATCGGAAGACACCAACTTTGGTAGAAGCTTTGAAGGATAGACATGTGAAATATATAGCATGTGGTTCAAATTACACAGCTGCCATTTGTCATCACAAATGGGTTTCTAGTGCTGAGCAGTCACAGTGCTCTGCTTGCAGACAGGCATTTGGGTTTACACGGAAGAGACACAACTGTTATAATTGTGGACTTGTCCACTGCCACTCTTGCAGTTCAAGAAAAGCATTAAGAGCAGCACTTGCACCTAATCCCAGTAAACCATATCGTGTATGTGATTCATGCTATGCAAAACTGATCAAGACATCAGAAGCTAGTAATAATAATAGGAAAAATGCTATGCCTCGCCTCTCAGGTGAGAACAAAGATAGGATTGACAAGAGTGATATGAGAATATCTAAGTCTGTGCCTTCCAATATGGATTTGATAAAGCAATTAGACAACAAAGCTGCTAAACAAGGAAAGAAGGCTGATACATTCTCCCTTGTTCGATCCTCTCAAGCACCTTCACTATTGCAGCTTAGAGATGTTGTATTATCAACTGCTGTTGATCTGCGACGAACAGCTCCTAAACCTGTCCTTACTGCTTCTGGAGTGAGTTCCAGATCTGTGTCACCTTTCTCAAGGAAACCAAGCCCTCCTCGATCTGCTACGCCTGTTCCTACAGCGTCAGGACTTTCCTTTTCCAGAAGTATTACTGATGGTTTGAAGAAAACAAATGATCTTTTGAATCATGAAGTGCTTAAACTACGTTCACAGGTTGAGAGCCTGAGGCAGAGATGTGAACTCCAGGAAATGGAGCTTCAGAAATCTATGAAGAAAACACGAGAAGCTATGGCAGTGGCTGCAGAGGAATCTGGTAAATCTAAAGCGGCTAAAGAAGTCATCAAGTTACTTACCGCCCAGCTTAAAGATATGGCTGAAAGGTTACCTCCTGGAGTATATGATGCTGAGAAAATGAGATCAGTTCATCTTTCAAATGGTTTGGAGTCAAACGGCGTCAACCATTTGAATATGAATGGAGAGCGTCATTCACGATCTGATTCACTTAGCAGCTACTCCTGTGCATCTCCCACGGCATCTGATGCTGCTGCTTGGCAAGGAAGCTATGGCGCAGTTCATTCATCCAGGGAGCTTTCTGGAACGAATGAAAGTAATCTGCAACAAGATAGAATTGACAGTCGAGATTCTAGACTGCCAAATAGTGGAAGAGCTCAGCCAGTAAGCAGTAGTGCCTCGGTGACAGCTGTTGGCAAGGAGCCCGAGTCTTTACAAGATGGTGAAAATAATTCTAGAGCCAAAACTTCTGTACTGGCTAATGCTACTCAAGTTGAAGCTGAATGGATTGAACAATATGAGCCTGGTGTATATATTACCCTTGTGGCTCTACGGGATGGTACTCGGGATCTAAAACGTGTGCGCTTCAGCCGGAGAAGATTTGGAGAGCATCAAGCAGAAAATTGGTGGTCAGAGAACCGTGAGAAGGTATACGAGAGATATAACGTTCGGAACTCCGACAAGTCTTCAGTTTCGGGACTGACTTCACAGAGGGCGGATGATGCAATTTCAATAGCTTCCCAGCAACTTTAG 3324 43.56 LQALITLKKGAQLLKYGRKGKPKFCPFRLSSDESSLIWISSKGERSLKLASISQIVPGQRTAVFERYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEAWIAGLKALIASGQGGRSKIDGWSDGGLYLDDSCELTSNSPSDSSHSVNRDNSSPEVFVSLNENKSLKTSRPENYIANSERAHVSLNQTSMQVKGSSSDVMRVSVSSAPSTSSHGSAPDDCDALGDVYIWGEIVGDNVVKIGAEKNSSYVTLRTDVLLPRPLESNVVLDIHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVVKDVSQPRMIESLAASSIDFVACGEFHTCAVTMTGELYTWGDGTHNAGLLGHGSDVSHWIPKRVSGPLEGLQIASVTCGPWHTALVTSMGQLFTFGDGTFGALGHGDRENISYPKEVESLSGLRTIAVACGVWHTSAVVEVIVTQSSASISSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYDFHKIACGHSLTVGLTTSGQVFSMGSTVYGQLGNPSADGKIPCLVEDKLFGESVEEVSCGAYHVVVLTSKNEVYTWGKGANGRLGHGDVEDRKTPTLVEALKDRHVKYIACGSNYTAAICHHKWVSSAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPSKPYRVCDSCYAKLIKTSEASNNNRKNAMPRLSGENKDRIDKSDMRISKSVPSNMDLIKQLDNKAAKQGKKADTFSLVRSSQAPSLLQLRDVVLSTAVDLRRTAPKPVLTASGVSSRSVSPFSRKPSPPRSATPVPTASGLSFSRSITDGLKKTNDLLNHEVLKLRSQVESLRQRCELQEMELQKSMKKTREAMAVAAEESGKSKAAKEVIKLLTAQLKDMAERLPPGVYDAEKMRSVHLSNGLESNGVNHLNMNGERHSRSDSLSSYSCASPTASDAAAWQGSYGAVHSSRELSGTNESNLQQDRIDSRDSRLPNSGRAQPVSSSASVTAVGKEPESLQDGENNSRAKTSVLANATQVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAENWWSENREKVYERYNVRNSDKSSVSGLTSQRADDAISIASQQL 1107
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17822255 17829306 + Cp4.1LG01g21080.1 Cpe01g02108 463421

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02108 1107 MobiDBLite consensus disorder prediction 185 216 - -
Cpe01g02108 1107 MobiDBLite consensus disorder prediction 954 1010 - -
Cpe01g02108 1107 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 616 678 IPR017455 -
Cpe01g02108 1107 SUPERFAMILY PH domain-like 2 109 - -
Cpe01g02108 1107 SUPERFAMILY FYVE/PHD zinc finger 612 686 IPR011011 -
Cpe01g02108 1107 SUPERFAMILY RCC1/BLIP-II 223 613 IPR009091 -
Cpe01g02108 1107 Pfam Regulator of chromosome condensation (RCC1) repeat 455 502 IPR000408 -
Cpe01g02108 1107 Pfam Regulator of chromosome condensation (RCC1) repeat 286 334 IPR000408 -
Cpe01g02108 1107 Pfam Regulator of chromosome condensation (RCC1) repeat 507 556 IPR000408 -
Cpe01g02108 1107 Pfam Regulator of chromosome condensation (RCC1) repeat 338 388 IPR000408 -
Cpe01g02108 1107 Pfam Regulator of chromosome condensation (RCC1) repeat 393 441 IPR000408 -
Cpe01g02108 1107 Pfam Regulator of chromosome condensation (RCC1) repeat 561 608 IPR000408 -
Cpe01g02108 1107 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 625 685 IPR013083 -
Cpe01g02108 1107 MobiDBLite consensus disorder prediction 772 805 - -
Cpe01g02108 1107 Pfam Pleckstrin homology domain 4 109 IPR001849 -
Cpe01g02108 1107 PRINTS Chromosome condensation regulator RCC1 signature 395 409 IPR000408 -
Cpe01g02108 1107 PRINTS Chromosome condensation regulator RCC1 signature 288 304 IPR000408 -
Cpe01g02108 1107 PRINTS Chromosome condensation regulator RCC1 signature 338 354 IPR000408 -
Cpe01g02108 1107 PRINTS Chromosome condensation regulator RCC1 signature 379 395 IPR000408 -
Cpe01g02108 1107 PRINTS Chromosome condensation regulator RCC1 signature 497 515 IPR000408 -
Cpe01g02108 1107 PRINTS Chromosome condensation regulator RCC1 signature 555 576 IPR000408 -
Cpe01g02108 1107 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 272 282 IPR000408 -
Cpe01g02108 1107 ProSiteProfiles BRX domain profile. 1024 1079 IPR013591 -
Cpe01g02108 1107 MobiDBLite consensus disorder prediction 694 709 - -
Cpe01g02108 1107 Coils Coil 818 852 - -
Cpe01g02108 1107 Coils Coil 867 887 - -
Cpe01g02108 1107 MobiDBLite consensus disorder prediction 185 217 - -
Cpe01g02108 1107 Pfam Transcription factor regulating root and shoot growth via Pin3 1023 1078 IPR013591 -
Cpe01g02108 1107 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 6 1086 - -
Cpe01g02108 1107 SMART fyve_4 611 679 IPR000306 GO:0046872
Cpe01g02108 1107 Pfam FYVE zinc finger 612 677 IPR000306 GO:0046872
Cpe01g02108 1107 MobiDBLite consensus disorder prediction 772 789 - -
Cpe01g02108 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 393 444 IPR000408 -
Cpe01g02108 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 286 337 IPR000408 -
Cpe01g02108 1107 MobiDBLite consensus disorder prediction 977 996 - -
Cpe01g02108 1107 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 379 389 IPR000408 -
Cpe01g02108 1107 Gene3D - 449 624 IPR009091 -
Cpe01g02108 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 560 611 IPR000408 -
Cpe01g02108 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 338 392 IPR000408 -
Cpe01g02108 1107 MobiDBLite consensus disorder prediction 906 934 - -
Cpe01g02108 1107 MobiDBLite consensus disorder prediction 684 719 - -
Cpe01g02108 1107 Gene3D - 1 115 IPR011993 -
Cpe01g02108 1107 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 6 1086 - -
Cpe01g02108 1107 Pfam Transcription factor BRX N-terminal domain 862 897 IPR027988 -
Cpe01g02108 1107 Gene3D - 349 448 IPR009091 -
Cpe01g02108 1107 Gene3D - 131 348 IPR009091 -
Cpe01g02108 1107 CDD PH_PLC_plant-like 1 110 - -
Cpe01g02108 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 456 507 IPR000408 -
Cpe01g02108 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 508 559 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02108 - - - csv:116404564 2036.92
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g02108 Cpe06g00896 CCT
Cpe01g02108 Cpe13g00670 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02108 Cpe-Chr1:17822255 Cpe02g00903 Cpe-Chr2:6486555 0 dispersed
Cpe17g00467 Cpe-Chr17:3481829 Cpe01g02108 Cpe-Chr1:17822255 1.36E-14 dispersed
Cpe18g00305 Cpe-Chr18:4611079 Cpe01g02108 Cpe-Chr1:17822255 0 transposed
Cpe01g02108 Cpe-Chr1:17822255 Cpe13g00670 Cpe-Chr13:6308036 0 wgd
Cpe01g02108 Cpe-Chr1:17822255 Cpe06g00896 Cpe-Chr6:6052283 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1250 Blo01g01332 Blo12g01105 Bda01g00698 Bda03g00034 Bpe02g00609 Bpe04g00023 Bma04g00032 Bma01g02116 Cmo04g02551 Cmo15g00619 Cma01g00988 . Car01g00880 . . Cpe06g00896 Cpe13g00670 . . . . . . . Cla08g00677 Cam08g1107 Cec08g0692 Cco08g0801 Clacu08g0813 . Cre08g0617 Cone4ag1510 Cone7ag1441 Cone17ag0794 Cone20ag0391 . . . Cme03g00380 Blo17g00217 Blo18g00216 . Bda13g01525 Bpe02g01605 Bpe14g00336 Bma01g00865 Bma02g00275 . Cmo01g01025 . . . Car04g02348 Car09g00994 Cpe01g02108 . Bhi09g01500 . . . . . . Cla09g00924 Cam09g0977 Cec09g0982 Cco09g0988 . . Cre09g0945 Lsi08g00535 . Chy03g00542 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000956 5 4 4 4 4 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 4 2 2 2 2 2 2 4 2 1 83