Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g02112 ATGGTTGGCAGCGCGATGGGGATGAGTGAGAAGAACGGTGAGGCTGAGATTTTGATCGGAGATTTGGATCCCAGTGGTCTTTTTTTGGAGTCTCTGACCAACGGCATGGATCTCGATGGAGAACATCATGCGGAATTGAAACAGAATGGGAAGAGGGAGATTGTGCTCGGTAGAAATGTCCACACTACTTGTTTCACCATCACCGAGCCAGATGCCAATGATGAATCCACTGGTGACAAGGATGCTTACATGGCTAGTGTGTTGGCTCGCTATAGAAAGAATCTCGTCGAGAGGACTAAGCATCATTTAGGTTACCCTTATAATTTGGACTTCGATTACGGTGCTCTGGGTCAGTTGCAGCATTTCTCGATTAACAATCTCGGCGATCCGTTCATTGAAAGCAATTACGGTGTGCACTCGAGGCAGTTTGAGGTTGGGGTTTTGGATTGGTTTGCTCGTCTTTGGGAGATTGAGAAAAATGACTATTGGGGTTACATTACAAATTGTGGCACAGAAGGCAACCTTCATGGGATTCTCGTCGGGTTAGTTTCATTGAGTTTGATTTACTCTTATGAATCTCATTATTCCGTTTTTAAAGCGGCTAGAATGTATAGAATGGACTGTGTGAAGGTTGGAACTCTGATATCTGGTGAGATCGATTGTGCTGACCTTAAACTCAAGTTGCTTGCTAACAAAGACAAGCCAGCTATACTCAATGTCAATATTGGAACCACTGTGAAAGGAGCCGTGGATGATCTTGATCTTGTGATACAAACACTCAACGAATGTGGATTCTCAAATGATCGGTTCTATATTCATTGTGATGGGGCATTGTTTGGACTTATGATGCCTTTTGTCAAACGTGCACCAAAGGTCTCGTTTAAGAAGCCCATTGGAAGTGTTAGTGTTTCAGGTCACAAGTTCATTGGATGTCCAATGCCTTGTGGTGTTCAGCTTACAAGGTTGGAGCATATAAATGCCCTCTCAAGGAATGTTGAGTATCTAGCCTCAAGGGATGCCACAATCATGGGAAGCCGGAATGGCCATGCTCCTATCTTCCTTTGGTACACCCTCAACAGAAAAGGCTATACAGGATTTCAAAAGGAAGTTCAGAAGTGTCTCAGAAATGCACACTACCTGAAAGGCCGGCTTCTTGACGCAGGAATTAGCGCAATGCTGAATGAACTTAGCAGCACCGTTGTGTTTGAACGACCCCGAGATGAAGAGTTTGTTCGTAGGTGGCAGCTTGCATGCGAAGGAAATATTGCTCATGTTGTGGTAATGCCCAATGTTATCCAAGAGAAGCTGGATGATTTCATAGCAGAATTGACCGAAAAACGCTCAACCTGGTATGCTGAAGACAAAGATCAACCTCCTTGCCTCGCAGCAGAGTTGGGAAAGGAAAACTGTGCCTGTAAGTTGCACAGGACTTGA 1434 44.63 MVGSAMGMSEKNGEAEILIGDLDPSGLFLESLTNGMDLDGEHHAELKQNGKREIVLGRNVHTTCFTITEPDANDESTGDKDAYMASVLARYRKNLVERTKHHLGYPYNLDFDYGALGQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEIEKNDYWGYITNCGTEGNLHGILVGLVSLSLIYSYESHYSVFKAARMYRMDCVKVGTLISGEIDCADLKLKLLANKDKPAILNVNIGTTVKGAVDDLDLVIQTLNECGFSNDRFYIHCDGALFGLMMPFVKRAPKVSFKKPIGSVSVSGHKFIGCPMPCGVQLTRLEHINALSRNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYTGFQKEVQKCLRNAHYLKGRLLDAGISAMLNELSSTVVFERPRDEEFVRRWQLACEGNIAHVVVMPNVIQEKLDDFIAELTEKRSTWYAEDKDQPPCLAAELGKENCACKLHRT 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17875864 17880726 + Cp4.1LG01g21090.1 Cpe01g02112 463425

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g02112 477 SUPERFAMILY PLP-dependent transferases 92 445 IPR015424 -
Cpe01g02112 477 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 300 321 IPR021115 GO:0016831
Cpe01g02112 477 Gene3D Aspartate Aminotransferase, domain 1 359 448 IPR015422 GO:0003824
Cpe01g02112 477 PANTHER - 10 476 - -
Cpe01g02112 477 Gene3D - 118 358 IPR015421 GO:0003824
Cpe01g02112 477 Pfam Pyridoxal-dependent decarboxylase conserved domain 187 397 IPR002129 GO:0016830|GO:0019752|GO:0030170
Cpe01g02112 477 PANTHER SERINE DECARBOXYLASE 10 476 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g02112 K25193 SDC; serine decarboxylase [EC:4.1.1.-] - csv:116404591 835.099
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02112 Cpe-Chr1:17875864 Cpe13g00539 Cpe-Chr13:5469153 1.83E-07 dispersed
Cpe01g02112 Cpe-Chr1:17875864 Cpe13g00678 Cpe-Chr13:6365492 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g107 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car04g02351 . Cpe01g02112 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004732 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 3 1 1 2 1 1 1 3 1 1 42